Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9643-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2319 | 1.324e-02 | 1.030e-02 | 1.088e-01 |
|---|
| IPC-NIBC-129 | 0.2420 | 4.505e-02 | 6.513e-02 | 4.164e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2362 | 1.900e-02 | 2.988e-02 | 3.813e-01 |
|---|
| Loi_GPL570 | 0.2231 | 8.540e-02 | 9.573e-02 | 3.292e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1689 | 5.000e-06 | 4.900e-05 | 2.000e-05 |
|---|
| Parker_GPL1390 | 0.2101 | 3.925e-02 | 4.932e-02 | 3.442e-01 |
|---|
| Parker_GPL887 | 0.0889 | 2.951e-01 | 3.130e-01 | 3.123e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3694 | 5.953e-01 | 5.277e-01 | 9.849e-01 |
|---|
| Schmidt | 0.2598 | 1.266e-02 | 1.418e-02 | 1.700e-01 |
|---|
| Sotiriou | 0.3161 | 1.137e-02 | 8.729e-03 | 2.027e-01 |
|---|
| Van-De-Vijver | 0.2645 | 5.260e-04 | 7.560e-04 | 3.789e-02 |
|---|
| Zhang | 0.2984 | 1.174e-01 | 7.443e-02 | 2.513e-01 |
|---|
| Zhou | 0.4562 | 6.102e-02 | 4.907e-02 | 3.673e-01 |
|---|
Expression data for subnetwork 9643-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9643-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cks2 |   | 12 | 18 | 34 | 32 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.080 | 0.284 | 0.383 |
|---|
| ccnb2 | | 12 | 18 | 84 | 62 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.279 | 0.211 | 0.463 |
|---|
| map4 | | 6 | 35 | 18 | 20 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.054 | -0.074 | 0.302 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| morf4l2 | | 1 | 116 | 131 | 139 | 0.079 | 0.055 | 0.014 | 0.149 | 0.146 | -0.016 | 0.243 | 0.090 | 0.038 | 0.090 | 0.036 | 0.077 | 0.159 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
GO Enrichment output for subnetwork 9643-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.394E-09 | 7.805E-06 |
|---|
| thymus development | GO:0048538 | | 1.249E-07 | 1.436E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.43E-06 | 1.096E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.267E-06 | 1.304E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 6.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 6.852E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 2.992E-06 |
|---|
| thymus development | GO:0048538 | | 8.911E-08 | 1.088E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.232E-06 | 1.003E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 1.752E-06 | 1.07E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 3.359E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 5.218E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.738E-05 | 6.688E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.859E-05 | 6.349E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| thymus development | GO:0048538 | | 1.318E-07 | 1.585E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.603E-06 | 1.285E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.312E-06 | 1.39E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 4.3E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 5.475E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.677E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.209E-05 | 7.722E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.02E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.225E-09 | 2.992E-06 |
|---|
| thymus development | GO:0048538 | | 8.911E-08 | 1.088E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.232E-06 | 1.003E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 1.752E-06 | 1.07E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.876E-06 | 3.359E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.516E-06 | 3.06E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.036E-06 | 2.805E-03 |
|---|
| response to UV | GO:0009411 | | 1.382E-05 | 4.22E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.922E-05 | 5.218E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.738E-05 | 6.688E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.859E-05 | 6.349E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| thymus development | GO:0048538 | | 1.318E-07 | 1.585E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.603E-06 | 1.285E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.312E-06 | 1.39E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 4.3E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 5.475E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.677E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.209E-05 | 7.722E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.02E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.114E-11 | 7.55E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.57E-11 | 8.159E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.639E-10 | 1.951E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.235E-10 | 3.781E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 6.294E-06 |
|---|
| thymus development | GO:0048538 | | 2.594E-08 | 1.544E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 5.717E-08 | 2.917E-05 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 2.085E-07 | 9.305E-05 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 3.169E-07 | 1.258E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 5.124E-07 | 1.83E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 6.346E-07 | 2.06E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.06E-11 | 1.116E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 4.099E-11 | 7.476E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.16E-10 | 1.411E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 2.393E-10 | 2.183E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.139E-09 | 4.479E-06 |
|---|
| thymus development | GO:0048538 | | 2.409E-08 | 1.465E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 6.125E-08 | 3.192E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 6.512E-07 | 2.969E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 7.12E-07 | 2.886E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.158E-06 | 4.223E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.34E-06 | 4.442E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| thymus development | GO:0048538 | | 1.318E-07 | 1.585E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.603E-06 | 1.285E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.312E-06 | 1.39E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 4.3E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 4.445E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 4.073E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 5.475E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 6.677E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.209E-05 | 7.722E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.02E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| thymus development | GO:0048538 | | 1.249E-07 | 1.436E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.43E-06 | 1.096E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.267E-06 | 1.304E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 6.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 6.852E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| thymus development | GO:0048538 | | 1.249E-07 | 1.436E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.43E-06 | 1.096E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.267E-06 | 1.304E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 6.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 6.852E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| thymus development | GO:0048538 | | 2.061E-08 | 3.798E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.639E-06 | 6.118E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.181E-05 | 7.256E-03 |
|---|
| male genitalia development | GO:0030539 | | 1.181E-05 | 5.442E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 6.527E-03 |
|---|
| genitalia development | GO:0048806 | | 1.771E-05 | 5.439E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 6.523E-03 |
|---|
| induction of an organ | GO:0001759 | | 2.478E-05 | 5.708E-03 |
|---|
| thyroid gland development | GO:0030878 | | 3.302E-05 | 6.761E-03 |
|---|
| negative regulation of microtubule depolymerization | GO:0007026 | | 3.302E-05 | 6.085E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 3.302E-05 | 5.532E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| thymus development | GO:0048538 | | 1.249E-07 | 1.436E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.43E-06 | 1.096E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 2.267E-06 | 1.304E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 6.598E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 6.852E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 7.207E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 9.791E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.593E-09 | 8.527E-06 |
|---|
| thymus development | GO:0048538 | | 2.216E-07 | 2.629E-04 |
|---|
| positive regulation of fibroblast proliferation | GO:0048146 | | 1.773E-06 | 1.402E-03 |
|---|
| regulation of fibroblast proliferation | GO:0048145 | | 3.056E-06 | 1.813E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.506E-05 | 7.147E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.735E-05 | 6.861E-03 |
|---|
| response to UV | GO:0009411 | | 2.119E-05 | 7.184E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.677E-05 | 7.941E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.567E-05 | 9.405E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.567E-05 | 8.465E-03 |
|---|
| induction of an organ | GO:0001759 | | 4.583E-05 | 9.887E-03 |
|---|
