Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 54386-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1772 | 1.640e-02 | 1.312e-02 | 1.284e-01 |
|---|
| IPC-NIBC-129 | 0.2160 | 3.630e-02 | 5.296e-02 | 3.605e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2258 | 7.915e-03 | 1.344e-02 | 2.391e-01 |
|---|
| Loi_GPL570 | 0.2500 | 5.856e-02 | 6.635e-02 | 2.474e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1630 | 3.300e-05 | 2.350e-04 | 3.840e-04 |
|---|
| Parker_GPL1390 | 0.2506 | 4.584e-02 | 5.718e-02 | 3.755e-01 |
|---|
| Parker_GPL887 | 0.0282 | 4.130e-01 | 4.321e-01 | 4.578e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4091 | 9.134e-01 | 8.925e-01 | 9.999e-01 |
|---|
| Schmidt | 0.2490 | 2.152e-02 | 2.502e-02 | 2.457e-01 |
|---|
| Sotiriou | 0.2994 | 1.500e-02 | 1.161e-02 | 2.366e-01 |
|---|
| Van-De-Vijver | 0.2802 | 2.476e-03 | 3.556e-03 | 1.060e-01 |
|---|
| Zhang | 0.2662 | 1.284e-01 | 8.327e-02 | 2.706e-01 |
|---|
| Zhou | 0.3695 | 4.228e-02 | 3.028e-02 | 2.748e-01 |
|---|
Expression data for subnetwork 54386-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 54386-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| pcna |   | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| fen1 | | 9 | 22 | 133 | 112 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.242 | 0.056 | 0.114 |
|---|
| cttn | | 10 | 20 | 1 | 6 | 0.067 | 0.065 | 0.123 | 0.238 | 0.126 | 0.263 | -0.172 | 0.216 | 0.069 | 0.115 | undef | 0.025 | 0.279 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| terf2ip | | 1 | 116 | 249 | 251 | -0.002 | 0.005 | 0.109 | -0.098 | 0.074 | 0.074 | -0.179 | -0.015 | -0.016 | 0.024 | 0.094 | 0.051 | 0.261 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| hras | | 14 | 15 | 42 | 34 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.195 | 0.022 | 0.245 | 0.086 | 0.208 | 0.180 | 0.003 | 0.197 |
|---|
| mdfi | | 7 | 30 | 42 | 35 | -0.050 | 0.215 | 0.036 | -0.005 | 0.054 | 0.263 | 0.176 | 0.130 | 0.296 | -0.041 | 0.074 | 0.076 | 0.056 |
|---|
| braf | | 1 | 116 | 249 | 251 | 0.017 | -0.109 | 0.073 | 0.006 | 0.072 | -0.009 | 0.038 | 0.157 | 0.092 | 0.071 | 0.078 | 0.033 | 0.046 |
|---|
| map2k1 | | 10 | 20 | 54 | 44 | 0.154 | 0.096 | 0.093 | 0.013 | 0.095 | 0.045 | -0.223 | 0.207 | 0.082 | 0.096 | undef | undef | 0.230 |
|---|
| grb2 | | 9 | 22 | 1 | 7 | 0.084 | -0.013 | 0.086 | -0.031 | 0.162 | -0.038 | 0.003 | 0.065 | 0.158 | 0.127 | 0.149 | 0.194 | -0.005 |
|---|
GO Enrichment output for subnetwork 54386-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 |  | 2.975E-06 | 6.842E-03 |
|---|
| response to light stimulus | GO:0009416 | | 8.34E-06 | 9.591E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 9.808E-06 | 7.52E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 7.607E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.7E-05 | 0.01242146 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.01272569 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.01241104 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 3.777E-05 | 0.01085966 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.032E-05 | 0.01285991 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01157392 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 5.032E-05 | 0.01052175 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.553E-07 | 2.089E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.041E-06 | 4.936E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.418E-06 | 5.226E-03 |
|---|
| response to UV | GO:0009411 | | 1.245E-05 | 7.603E-03 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 1.346E-05 | 6.578E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 7.305E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.794E-05 | 6.262E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.794E-05 | 5.479E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 2.306E-05 | 6.259E-03 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 2.306E-05 | 5.633E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.361E-05 | 5.244E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.055E-06 | 2.539E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 6.749E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 7.167E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 0.01094969 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 0.01001594 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.498E-05 | 8.585E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.498E-05 | 7.512E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 3.209E-05 | 8.58E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.722E-03 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 3.209E-05 | 7.02E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.553E-07 | 2.089E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.041E-06 | 4.936E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.418E-06 | 5.226E-03 |
|---|
| response to UV | GO:0009411 | | 1.245E-05 | 7.603E-03 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 1.346E-05 | 6.578E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 7.305E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.794E-05 | 6.262E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.794E-05 | 5.479E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 2.306E-05 | 6.259E-03 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 2.306E-05 | 5.633E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.361E-05 | 5.244E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.055E-06 | 2.539E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 6.749E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 7.167E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 0.01094969 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 0.01001594 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.498E-05 | 8.585E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.498E-05 | 7.512E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 3.209E-05 | 8.58E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.722E-03 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 3.209E-05 | 7.02E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.814E-08 | 1.362E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 7.712E-07 | 1.377E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 1.823E-06 | 2.17E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 3.333E-06 | 2.975E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 8.371E-06 | 5.978E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 8.371E-06 | 4.982E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 8.371E-06 | 4.27E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 8.371E-06 | 3.736E-03 |
|---|
| response to UV | GO:0009411 | | 1.226E-05 | 4.865E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.255E-05 | 4.481E-03 |
|---|
| insulin receptor substrate binding | GO:0043560 | | 1.255E-05 | 4.074E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.861E-08 | 1.044E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 6.749E-07 | 1.231E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 9.924E-07 | 1.207E-03 |
|---|
| response to light stimulus | GO:0009416 | | 1.328E-06 | 1.211E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.752E-06 | 2.008E-03 |
|---|
| protein localization to telomere | GO:0070198 | | 6.839E-06 | 4.158E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 6.839E-06 | 3.564E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 6.839E-06 | 3.118E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 6.839E-06 | 2.772E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 6.839E-06 | 2.495E-03 |
|---|
| epidermal growth factor receptor binding | GO:0005154 | | 6.839E-06 | 2.268E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.055E-06 | 2.539E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.61E-06 | 6.749E-03 |
|---|
| muscle cell migration | GO:0014812 | | 8.937E-06 | 7.167E-03 |
|---|
| response to UV | GO:0009411 | | 1.82E-05 | 0.01094969 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 1.874E-05 | 9.02E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.498E-05 | 0.01001594 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.498E-05 | 8.585E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.498E-05 | 7.512E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 3.209E-05 | 8.58E-03 |
|---|
| induction of an organ | GO:0001759 | | 3.209E-05 | 7.722E-03 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 3.209E-05 | 7.02E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 6.842E-03 |
|---|
| response to light stimulus | GO:0009416 | | 8.34E-06 | 9.591E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 9.808E-06 | 7.52E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 7.607E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.7E-05 | 0.01242146 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.01272569 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.01241104 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 3.777E-05 | 0.01085966 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.032E-05 | 0.01285991 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01157392 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 5.032E-05 | 0.01052175 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 6.842E-03 |
|---|
| response to light stimulus | GO:0009416 | | 8.34E-06 | 9.591E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 9.808E-06 | 7.52E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 7.607E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.7E-05 | 0.01242146 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.01272569 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.01241104 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 3.777E-05 | 0.01085966 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.032E-05 | 0.01285991 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01157392 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 5.032E-05 | 0.01052175 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 4.399E-07 | 8.108E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.355E-06 | 2.17E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.518E-05 | 9.327E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.518E-05 | 6.995E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.518E-05 | 5.596E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.137E-05 | 6.565E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 2.276E-05 | 5.992E-03 |
|---|
| telomere maintenance via telomerase | GO:0007004 | | 2.276E-05 | 5.243E-03 |
|---|
| thymus development | GO:0048538 | | 2.276E-05 | 4.66E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.276E-05 | 4.194E-03 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 2.943E-05 | 4.93E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.975E-06 | 6.842E-03 |
|---|
| response to light stimulus | GO:0009416 | | 8.34E-06 | 9.591E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 9.808E-06 | 7.52E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.323E-05 | 7.607E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.7E-05 | 0.01242146 |
|---|
| response to UV | GO:0009411 | | 3.32E-05 | 0.01272569 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.777E-05 | 0.01241104 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 3.777E-05 | 0.01085966 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.032E-05 | 0.01285991 |
|---|
| induction of an organ | GO:0001759 | | 5.032E-05 | 0.01157392 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 5.032E-05 | 0.01052175 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.299E-06 | 5.455E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.023E-05 | 0.01214108 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.269E-05 | 0.01794398 |
|---|
| response to UV | GO:0009411 | | 2.743E-05 | 0.01627304 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.173E-05 | 0.01506132 |
|---|
| negative regulation of telomere maintenance | GO:0032205 | | 3.173E-05 | 0.0125511 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 4.228E-05 | 0.01433306 |
|---|
| regulation of telomere maintenance | GO:0032204 | | 4.228E-05 | 0.01254143 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 4.228E-05 | 0.01114794 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 5.432E-05 | 0.01288981 |
|---|
| induction of an organ | GO:0001759 | | 5.432E-05 | 0.01171801 |
|---|
