Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3741-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1574 | 9.740e-03 | 7.270e-03 | 8.538e-02 |
|---|
| IPC-NIBC-129 | 0.2575 | 3.229e-02 | 4.734e-02 | 3.324e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2511 | 1.664e-03 | 3.223e-03 | 9.169e-02 |
|---|
| Loi_GPL570 | 0.2146 | 9.607e-02 | 1.073e-01 | 3.587e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1238 | 2.000e-06 | 1.900e-05 | 3.000e-06 |
|---|
| Parker_GPL1390 | 0.3217 | 3.544e-02 | 4.473e-02 | 3.245e-01 |
|---|
| Parker_GPL887 | 0.0096 | 4.648e-01 | 4.838e-01 | 5.208e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3097 | 9.847e-01 | 9.807e-01 | 1.000e+00 |
|---|
| Schmidt | 0.2669 | 1.605e-02 | 1.828e-02 | 2.010e-01 |
|---|
| Sotiriou | 0.3183 | 1.095e-02 | 8.400e-03 | 1.984e-01 |
|---|
| Van-De-Vijver | 0.2887 | 1.420e-04 | 2.030e-04 | 1.496e-02 |
|---|
| Zhang | 0.2841 | 2.294e-01 | 1.723e-01 | 4.306e-01 |
|---|
| Zhou | 0.5289 | 1.048e-01 | 9.859e-02 | 5.350e-01 |
|---|
Expression data for subnetwork 3741-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3741-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| mybl2 |   | 9 | 22 | 56 | 48 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.184 | 0.333 | 0.275 | 0.202 | 0.182 | 0.289 | 0.074 | 0.245 |
|---|
| snw1 | | 1 | 116 | 146 | 150 | -0.131 | 0.069 | 0.144 | 0.068 | 0.062 | 0.008 | -0.068 | -0.104 | 0.131 | -0.017 | -0.122 | 0.230 | 0.188 |
|---|
| ssx2ip | | 1 | 116 | 146 | 150 | -0.120 | 0.099 | 0.067 | 0.052 | 0.102 | 0.277 | -0.144 | -0.087 | -0.015 | 0.110 | 0.078 | 0.011 | 0.225 |
|---|
| notch1 | | 3 | 62 | 133 | 125 | 0.088 | 0.293 | -0.017 | -0.179 | 0.066 | 0.172 | 0.176 | 0.061 | 0.087 | 0.030 | 0.082 | -0.062 | 0.218 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| sp1 | | 8 | 26 | 71 | 57 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.304 | 0.091 | -0.068 |
|---|
| actn2 | | 1 | 116 | 146 | 150 | -0.060 | 0.016 | 0.100 | 0.056 | 0.083 | 0.108 | -0.238 | 0.082 | 0.198 | 0.155 | undef | 0.073 | 0.235 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| lrp12 | | 1 | 116 | 146 | 150 | 0.086 | 0.186 | 0.036 | 0.050 | 0.063 | 0.165 | 0.170 | 0.132 | 0.066 | 0.076 | 0.081 | 0.189 | 0.149 |
|---|
| kcna5 | | 1 | 116 | 146 | 150 | -0.050 | -0.174 | -0.052 | -0.121 | 0.064 | 0.090 | -0.255 | 0.118 | 0.076 | -0.045 | 0.091 | 0.088 | -0.129 |
|---|
| hdac2 | | 3 | 62 | 146 | 135 | 0.012 | 0.245 | 0.030 | 0.077 | 0.070 | 0.307 | -0.204 | 0.183 | 0.222 | -0.058 | 0.038 | 0.133 | 0.181 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| ifi27 | | 1 | 116 | 146 | 150 | 0.089 | 0.086 | 0.105 | 0.055 | 0.101 | 0.007 | 0.360 | 0.149 | 0.129 | 0.045 | 0.120 | 0.118 | 0.194 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 3741-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 2.466E-05 | 0.0567283 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 2.466E-05 | 0.02836415 |
|---|
| anagen | GO:0042640 | | 2.466E-05 | 0.01890943 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.466E-05 | 0.01418207 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 2.466E-05 | 0.01134566 |
|---|
| hair follicle maturation | GO:0048820 | | 3.696E-05 | 0.01416801 |
|---|
| regulation of myoblast differentiation | GO:0045661 | | 3.696E-05 | 0.01214401 |
|---|
| regulation of epidermal cell differentiation | GO:0045604 | | 3.696E-05 | 0.01062601 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.991E-05 | 0.0127555 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.169E-05 | 0.01188934 |
|---|
| negative regulation of muscle cell differentiation | GO:0051148 | | 5.169E-05 | 0.01080849 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 0.01567831 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 6.418E-06 | 7.839E-03 |
|---|
| anagen | GO:0042640 | | 6.418E-06 | 5.226E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 6.418E-06 | 3.92E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 6.418E-06 | 3.136E-03 |
|---|
| stem cell division | GO:0017145 | | 6.418E-06 | 2.613E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 8.239E-06 | 2.875E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 9.622E-06 | 2.938E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 9.622E-06 | 2.612E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 2.351E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 9.622E-06 | 2.137E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 8.937E-06 | 0.01075063 |
|---|
| anagen | GO:0042640 | | 8.937E-06 | 7.167E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 8.937E-06 | 5.375E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 8.937E-06 | 4.3E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.584E-03 |
|---|
| stem cell division | GO:0017145 | | 8.937E-06 | 3.072E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.34E-05 | 4.029E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 1.34E-05 | 3.581E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 1.34E-05 | 3.223E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 2.949E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 0.01567831 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 6.418E-06 | 7.839E-03 |
|---|
| anagen | GO:0042640 | | 6.418E-06 | 5.226E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 6.418E-06 | 3.92E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 6.418E-06 | 3.136E-03 |
|---|
| stem cell division | GO:0017145 | | 6.418E-06 | 2.613E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 8.239E-06 | 2.875E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 9.622E-06 | 2.938E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 9.622E-06 | 2.612E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 2.351E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 9.622E-06 | 2.137E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 8.937E-06 | 0.01075063 |
|---|
| anagen | GO:0042640 | | 8.937E-06 | 7.167E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 8.937E-06 | 5.375E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 8.937E-06 | 4.3E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.584E-03 |
|---|
| stem cell division | GO:0017145 | | 8.937E-06 | 3.072E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.34E-05 | 4.029E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 1.34E-05 | 3.581E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 1.34E-05 | 3.223E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 2.949E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| actin filament | GO:0005884 | | 1.22E-06 | 4.358E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 7.176E-06 | 0.01281221 |
|---|
| negative regulation of myoblast differentiation | GO:0045662 | | 7.176E-06 | 8.541E-03 |
|---|
| stem cell division | GO:0017145 | | 7.176E-06 | 6.406E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.176E-06 | 5.125E-03 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 7.176E-06 | 4.271E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 7.176E-06 | 3.661E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.027E-05 | 4.584E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.076E-05 | 4.269E-03 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 1.076E-05 | 3.842E-03 |
|---|
| definitive hemopoiesis | GO:0060216 | | 1.076E-05 | 3.492E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| actin filament | GO:0005884 | | 4.18E-06 | 0.01524946 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 1.708E-05 | 0.03115444 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 1.708E-05 | 0.02076963 |
|---|
| stem cell division | GO:0017145 | | 1.708E-05 | 0.01557722 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 1.708E-05 | 0.01246178 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 1.708E-05 | 0.01038481 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.56E-05 | 0.01334097 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 2.56E-05 | 0.01167335 |
|---|
| anagen | GO:0042640 | | 2.56E-05 | 0.01037631 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.56E-05 | 9.339E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.56E-05 | 8.49E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 0.02150125 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 8.937E-06 | 0.01075063 |
|---|
| anagen | GO:0042640 | | 8.937E-06 | 7.167E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 8.937E-06 | 5.375E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 8.937E-06 | 4.3E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.584E-03 |
|---|
| stem cell division | GO:0017145 | | 8.937E-06 | 3.072E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.34E-05 | 4.029E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 1.34E-05 | 3.581E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 1.34E-05 | 3.223E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.348E-05 | 2.949E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.466E-05 | 0.0567283 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 2.466E-05 | 0.02836415 |
|---|
| anagen | GO:0042640 | | 2.466E-05 | 0.01890943 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.466E-05 | 0.01418207 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 2.466E-05 | 0.01134566 |
|---|
| hair follicle maturation | GO:0048820 | | 3.696E-05 | 0.01416801 |
|---|
| regulation of myoblast differentiation | GO:0045661 | | 3.696E-05 | 0.01214401 |
|---|
| regulation of epidermal cell differentiation | GO:0045604 | | 3.696E-05 | 0.01062601 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.991E-05 | 0.0127555 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.169E-05 | 0.01188934 |
|---|
| negative regulation of muscle cell differentiation | GO:0051148 | | 5.169E-05 | 0.01080849 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.466E-05 | 0.0567283 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 2.466E-05 | 0.02836415 |
|---|
| anagen | GO:0042640 | | 2.466E-05 | 0.01890943 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.466E-05 | 0.01418207 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 2.466E-05 | 0.01134566 |
|---|
| hair follicle maturation | GO:0048820 | | 3.696E-05 | 0.01416801 |
|---|
| regulation of myoblast differentiation | GO:0045661 | | 3.696E-05 | 0.01214401 |
|---|
| regulation of epidermal cell differentiation | GO:0045604 | | 3.696E-05 | 0.01062601 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.991E-05 | 0.0127555 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.169E-05 | 0.01188934 |
|---|
| negative regulation of muscle cell differentiation | GO:0051148 | | 5.169E-05 | 0.01080849 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| hair follicle maturation | GO:0048820 | | 1.897E-05 | 0.0349658 |
|---|
| regulation of myoblast differentiation | GO:0045661 | | 1.897E-05 | 0.0174829 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 1.897E-05 | 0.01165527 |
|---|
| regulation of epidermal cell differentiation | GO:0045604 | | 1.897E-05 | 8.741E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 1.897E-05 | 6.993E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 2.844E-05 | 8.735E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.844E-05 | 7.487E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.844E-05 | 6.551E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.844E-05 | 5.823E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.978E-05 | 7.331E-03 |
|---|
| hair follicle morphogenesis | GO:0031069 | | 3.978E-05 | 6.665E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.466E-05 | 0.0567283 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 2.466E-05 | 0.02836415 |
|---|
| anagen | GO:0042640 | | 2.466E-05 | 0.01890943 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.466E-05 | 0.01418207 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 2.466E-05 | 0.01134566 |
|---|
| hair follicle maturation | GO:0048820 | | 3.696E-05 | 0.01416801 |
|---|
| regulation of myoblast differentiation | GO:0045661 | | 3.696E-05 | 0.01214401 |
|---|
| regulation of epidermal cell differentiation | GO:0045604 | | 3.696E-05 | 0.01062601 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.991E-05 | 0.0127555 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.169E-05 | 0.01188934 |
|---|
| negative regulation of muscle cell differentiation | GO:0051148 | | 5.169E-05 | 0.01080849 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| anagen | GO:0042640 | | 2.193E-05 | 0.05205149 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.193E-05 | 0.02602574 |
|---|
| regulation of potassium ion transport | GO:0043266 | | 2.193E-05 | 0.0173505 |
|---|
| definitive hemopoiesis | GO:0060216 | | 2.193E-05 | 0.01301287 |
|---|
| negative regulation of myoblast differentiation | GO:0045662 | | 2.193E-05 | 0.0104103 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 2.193E-05 | 8.675E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 2.193E-05 | 7.436E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 3.287E-05 | 9.75E-03 |
|---|
| hair follicle maturation | GO:0048820 | | 3.287E-05 | 8.667E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.287E-05 | 7.8E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.598E-05 | 9.918E-03 |
|---|
