Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3308-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1651 | 1.416e-02 | 1.111e-02 | 1.146e-01 |
|---|
| IPC-NIBC-129 | 0.3005 | 3.385e-02 | 4.952e-02 | 3.435e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2330 | 8.060e-03 | 1.366e-02 | 2.416e-01 |
|---|
| Loi_GPL570 | 0.2395 | 6.789e-02 | 7.660e-02 | 2.773e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1571 | 0.000e+00 | 1.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2497 | 7.323e-02 | 8.932e-02 | 4.817e-01 |
|---|
| Parker_GPL887 | 0.1082 | 4.441e-01 | 4.632e-01 | 4.957e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4218 | 5.034e-01 | 4.306e-01 | 9.674e-01 |
|---|
| Schmidt | 0.2162 | 2.021e-02 | 2.340e-02 | 2.356e-01 |
|---|
| Sotiriou | 0.3194 | 1.077e-02 | 8.253e-03 | 1.965e-01 |
|---|
| Van-De-Vijver | 0.2853 | 8.520e-04 | 1.226e-03 | 5.271e-02 |
|---|
| Zhang | 0.2701 | 1.403e-01 | 9.310e-02 | 2.912e-01 |
|---|
| Zhou | 0.4293 | 3.757e-02 | 2.588e-02 | 2.489e-01 |
|---|
Expression data for subnetwork 3308-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3308-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| raf1 | | 2 | 78 | 123 | 121 | -0.086 | 0.062 | 0.099 | 0.225 | 0.069 | 0.133 | -0.229 | 0.001 | -0.111 | 0.125 | 0.053 | 0.018 | 0.347 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| mdfi | | 7 | 30 | 42 | 35 | -0.050 | 0.215 | 0.036 | -0.005 | 0.054 | 0.263 | 0.176 | 0.130 | 0.296 | -0.041 | 0.074 | 0.076 | 0.056 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| hspa4 | | 1 | 116 | 123 | 130 | -0.022 | 0.103 | 0.073 | 0.049 | 0.094 | 0.018 | undef | 0.282 | -0.099 | 0.168 | undef | -0.095 | 0.157 |
|---|
GO Enrichment output for subnetwork 3308-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.274E-11 | 7.531E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.315E-08 | 7.262E-05 |
|---|
| interphase | GO:0051325 | | 7.092E-08 | 5.437E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.247E-07 | 1.292E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.267E-06 | 1.043E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.267E-06 | 8.69E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.009E-05 | 3.316E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.658E-05 | 4.767E-03 |
|---|
| response to UV | GO:0009411 | | 2.535E-05 | 6.479E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.163E-05 | 7.274E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 3.163E-05 | 6.613E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.986E-12 | 1.462E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.619E-08 | 1.978E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.693E-08 | 4.636E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.553E-07 | 5.224E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.11E-06 | 5.421E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.041E-06 | 1.645E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.418E-06 | 2.24E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 2.068E-03 |
|---|
| response to UV | GO:0009411 | | 1.245E-05 | 3.379E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 4.383E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.794E-05 | 3.985E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.834E-12 | 1.885E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.752E-08 | 2.108E-05 |
|---|
| interphase | GO:0051325 | | 2.05E-08 | 1.644E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.946E-08 | 4.178E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 7.518E-07 | 3.618E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.297E-06 | 5.202E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.001E-06 | 1.375E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.155E-06 | 2.152E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.912E-06 | 2.115E-03 |
|---|
| response to UV | GO:0009411 | | 1.3E-05 | 3.128E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2E-05 | 4.375E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.986E-12 | 1.462E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.619E-08 | 1.978E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.693E-08 | 4.636E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 8.553E-07 | 5.224E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.11E-06 | 5.421E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.041E-06 | 1.645E-03 |
|---|
| muscle cell migration | GO:0014812 | | 6.418E-06 | 2.24E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 2.068E-03 |
|---|
| response to UV | GO:0009411 | | 1.245E-05 | 3.379E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.794E-05 | 4.383E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.794E-05 | 3.985E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.834E-12 | 1.885E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.752E-08 | 2.108E-05 |
|---|
| interphase | GO:0051325 | | 2.05E-08 | 1.644E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.946E-08 | 4.178E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 7.518E-07 | 3.618E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.297E-06 | 5.202E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.001E-06 | 1.375E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.155E-06 | 2.152E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.912E-06 | 2.115E-03 |
|---|
| response to UV | GO:0009411 | | 1.3E-05 | 3.128E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2E-05 | 4.375E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.106E-13 | 1.823E-09 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.124E-09 | 3.792E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 2.059E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.7E-08 | 2.41E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 3.636E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.044E-07 | 6.214E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 5.723E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.093E-07 | 9.343E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 2.213E-07 | 8.78E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 3.505E-07 | 1.252E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.004E-06 | 3.259E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.752E-13 | 1.004E-09 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.035E-09 | 1.888E-06 |
|---|
| interphase | GO:0051325 | | 1.172E-09 | 1.425E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.178E-08 | 8.597E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 4.151E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 3.802E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 5.115E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.122E-07 | 4.547E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 4.419E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.659E-07 | 8.819E-05 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.834E-12 | 1.885E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.752E-08 | 2.108E-05 |
|---|
| interphase | GO:0051325 | | 2.05E-08 | 1.644E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.946E-08 | 4.178E-05 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 7.518E-07 | 3.618E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.297E-06 | 5.202E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.001E-06 | 1.375E-03 |
|---|
| muscle cell migration | GO:0014812 | | 7.155E-06 | 2.152E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.912E-06 | 2.115E-03 |
|---|
| response to UV | GO:0009411 | | 1.3E-05 | 3.128E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2E-05 | 4.375E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.274E-11 | 7.531E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.315E-08 | 7.262E-05 |
|---|
| interphase | GO:0051325 | | 7.092E-08 | 5.437E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.247E-07 | 1.292E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.267E-06 | 1.043E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.267E-06 | 8.69E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.009E-05 | 3.316E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.658E-05 | 4.767E-03 |
|---|
| response to UV | GO:0009411 | | 2.535E-05 | 6.479E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.163E-05 | 7.274E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 3.163E-05 | 6.613E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.274E-11 | 7.531E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.315E-08 | 7.262E-05 |
|---|
| interphase | GO:0051325 | | 7.092E-08 | 5.437E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.247E-07 | 1.292E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.267E-06 | 1.043E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.267E-06 | 8.69E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.009E-05 | 3.316E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.658E-05 | 4.767E-03 |
|---|
| response to UV | GO:0009411 | | 2.535E-05 | 6.479E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.163E-05 | 7.274E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 3.163E-05 | 6.613E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.837E-07 | 3.386E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 9.853E-07 | 9.079E-04 |
|---|
| muscle cell migration | GO:0014812 | | 8.861E-06 | 5.444E-03 |
|---|
| cytoplasmic sequestering of transcription factor | GO:0042994 | | 1.329E-05 | 6.121E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.329E-05 | 4.897E-03 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 1.329E-05 | 4.081E-03 |
|---|
| thymus development | GO:0048538 | | 1.329E-05 | 3.498E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.859E-05 | 4.283E-03 |
|---|
| axis specification | GO:0009798 | | 1.859E-05 | 3.807E-03 |
|---|
| induction of an organ | GO:0001759 | | 1.859E-05 | 3.426E-03 |
|---|
| thyroid gland development | GO:0030878 | | 2.478E-05 | 4.151E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.274E-11 | 7.531E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.315E-08 | 7.262E-05 |
|---|
| interphase | GO:0051325 | | 7.092E-08 | 5.437E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.247E-07 | 1.292E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.267E-06 | 1.043E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.267E-06 | 8.69E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.009E-05 | 3.316E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.658E-05 | 4.767E-03 |
|---|
| response to UV | GO:0009411 | | 2.535E-05 | 6.479E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.163E-05 | 7.274E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 3.163E-05 | 6.613E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.469E-11 | 8.232E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.677E-08 | 6.735E-05 |
|---|
| interphase | GO:0051325 | | 6.367E-08 | 5.036E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.143E-07 | 1.272E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.024E-06 | 9.608E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.024E-06 | 8.007E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 9.015E-06 | 3.056E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.719E-05 | 5.098E-03 |
|---|
| response to UV | GO:0009411 | | 2.418E-05 | 6.375E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.92E-05 | 6.929E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 2.92E-05 | 6.299E-03 |
|---|
