Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3799-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2371 | 1.667e-02 | 1.998e-02 | 1.443e-01 |
|---|
| IPC-NIBC-129 | 0.2481 | 3.806e-02 | 4.758e-02 | 3.746e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2234 | 1.108e-02 | 1.688e-02 | 2.798e-01 |
|---|
| Loi_GPL570 | 0.2382 | 6.312e-02 | 6.268e-02 | 3.018e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1468 | 8.000e-06 | 5.300e-05 | 5.400e-05 |
|---|
| Parker_GPL1390 | 0.2780 | 5.829e-02 | 5.528e-02 | 4.100e-01 |
|---|
| Parker_GPL887 | 0.1298 | 5.472e-01 | 5.796e-01 | 5.890e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2945 | 9.620e-02 | 6.992e-02 | 5.063e-01 |
|---|
| Schmidt | 0.2423 | 7.014e-03 | 1.017e-02 | 9.893e-02 |
|---|
| Sotiriou | 0.3368 | 3.648e-03 | 1.165e-03 | 8.165e-02 |
|---|
| Wang | 0.0550 | 1.366e-01 | 9.902e-02 | 4.457e-01 |
|---|
| Zhang | 0.2749 | 5.740e-01 | 5.266e-01 | 8.605e-01 |
|---|
| Zhou | 0.3901 | 1.135e-01 | 1.266e-01 | 5.999e-01 |
|---|
Expression data for subnetwork 3799-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3799-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn1a |   | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| brca1 | | 8 | 33 | 175 | 150 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | -0.124 | 0.305 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 | 0.209 |
|---|
| prkci | | 12 | 20 | 31 | 19 | 0.065 | 0.104 | 0.012 | 0.170 | 0.112 | 0.088 | -0.103 | -0.170 | 0.196 | 0.128 | -0.054 | 0.124 | 0.149 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tbcd | | 1 | 164 | 359 | 359 | 0.154 | 0.053 | 0.122 | -0.073 | 0.142 | 0.317 | -0.230 | 0.094 | 0.083 | 0.128 | 0.086 | -0.007 | 0.032 |
|---|
| cript | | 2 | 104 | 345 | 332 | -0.059 | 0.179 | 0.045 | 0.159 | 0.052 | 0.139 | 0.048 | 0.115 | -0.033 | 0.017 | -0.012 | 0.204 | 0.283 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| gabbr1 | | 6 | 43 | 88 | 77 | 0.003 | -0.016 | -0.022 | -0.051 | 0.082 | 0.119 | 0.584 | -0.082 | 0.049 | 0.057 | 0.011 | 0.096 | 0.116 |
|---|
| mark4 | | 5 | 50 | 182 | 159 | 0.114 | 0.070 | 0.091 | 0.001 | 0.086 | -0.135 | 0.437 | -0.005 | 0.027 | 0.084 | 0.059 | 0.074 | 0.104 |
|---|
| kif5b | | 1 | 164 | 359 | 359 | 0.118 | 0.134 | -0.054 | -0.074 | 0.101 | 0.137 | 0.049 | -0.017 | -0.043 | 0.089 | -0.015 | 0.044 | 0.192 |
|---|
| nfatc4 | | 8 | 33 | 31 | 25 | 0.094 | -0.056 | -0.021 | 0.204 | 0.079 | -0.008 | 0.243 | 0.060 | 0.077 | -0.012 | 0.080 | 0.131 | 0.154 |
|---|
| tubb | | 8 | 33 | 93 | 80 | 0.107 | 0.221 | 0.070 | 0.090 | 0.095 | 0.278 | -0.325 | 0.185 | 0.139 | 0.202 | -0.061 | -0.142 | 0.101 |
|---|
| ywhaz | | 11 | 21 | 31 | 20 | 0.124 | 0.089 | 0.087 | 0.200 | 0.141 | 0.110 | 0.228 | 0.199 | 0.056 | 0.123 | -0.026 | 0.103 | 0.213 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
GO Enrichment output for subnetwork 3799-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 |  | 6.72E-11 | 1.546E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.764E-10 | 3.179E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.684E-09 | 1.291E-06 |
|---|
| spindle organization | GO:0007051 | | 3.282E-09 | 1.887E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 4.397E-09 | 2.023E-06 |
|---|
| cell killing | GO:0001906 | | 1.328E-08 | 5.091E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 7.331E-08 | 2.409E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.863E-08 | 2.261E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.403E-07 | 1.892E-04 |
|---|
| interphase | GO:0051325 | | 8.304E-07 | 1.91E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.2E-06 | 2.508E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.02E-11 | 2.492E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 4.264E-10 | 5.209E-07 |
|---|
| spindle organization | GO:0007051 | | 4.514E-10 | 3.676E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.003E-09 | 6.128E-07 |
|---|
| cell killing | GO:0001906 | | 2.759E-09 | 1.348E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.767E-08 | 7.193E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.534E-08 | 8.844E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.433E-07 | 4.377E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.208E-07 | 8.708E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 5.018E-07 | 1.226E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.689E-07 | 1.708E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.799E-11 | 4.327E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 7.515E-10 | 9.04E-07 |
|---|
| spindle organization | GO:0007051 | | 9.128E-10 | 7.321E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.768E-09 | 1.063E-06 |
|---|
| cell killing | GO:0001906 | | 4.859E-09 | 2.338E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.705E-08 | 1.085E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.457E-08 | 1.532E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.458E-07 | 7.392E-05 |
|---|
| interphase | GO:0051325 | | 2.872E-07 | 7.677E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.626E-07 | 1.354E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 7.676E-07 | 1.679E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.02E-11 | 2.492E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 4.264E-10 | 5.209E-07 |
|---|
| spindle organization | GO:0007051 | | 4.514E-10 | 3.676E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.003E-09 | 6.128E-07 |
|---|
| cell killing | GO:0001906 | | 2.759E-09 | 1.348E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.767E-08 | 7.193E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.534E-08 | 8.844E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.433E-07 | 4.377E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.208E-07 | 8.708E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 5.018E-07 | 1.226E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.689E-07 | 1.708E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.799E-11 | 4.327E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 7.515E-10 | 9.04E-07 |
|---|
| spindle organization | GO:0007051 | | 9.128E-10 | 7.321E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.768E-09 | 1.063E-06 |
|---|
| cell killing | GO:0001906 | | 4.859E-09 | 2.338E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.705E-08 | 1.085E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.457E-08 | 1.532E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.458E-07 | 7.392E-05 |
|---|
| interphase | GO:0051325 | | 2.872E-07 | 7.677E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.626E-07 | 1.354E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 7.676E-07 | 1.679E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.285E-10 | 8.161E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.642E-09 | 2.932E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.356E-08 | 1.615E-05 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.832E-08 | 1.635E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.766E-08 | 3.404E-05 |
|---|
| gamma-tubulin complex | GO:0000930 | | 1.02E-07 | 6.071E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.107E-07 | 5.646E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.558E-07 | 6.955E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.263E-07 | 1.691E-04 |
|---|
| tubulin binding | GO:0015631 | | 5.133E-07 | 1.833E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 9.009E-07 | 2.925E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.453E-09 | 8.95E-06 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 9.53E-08 | 1.738E-04 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.173E-07 | 1.426E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.924E-07 | 5.403E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.165E-06 | 8.498E-04 |
|---|
| tubulin binding | GO:0015631 | | 1.686E-06 | 1.025E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.686E-06 | 8.785E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 2.974E-06 | 1.356E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.839E-06 | 1.556E-03 |
|---|
| interphase | GO:0051325 | | 4.233E-06 | 1.544E-03 |
|---|
| spindle organization | GO:0007051 | | 6.025E-06 | 1.998E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.799E-11 | 4.327E-08 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 7.515E-10 | 9.04E-07 |
|---|
| spindle organization | GO:0007051 | | 9.128E-10 | 7.321E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 1.768E-09 | 1.063E-06 |
|---|
| cell killing | GO:0001906 | | 4.859E-09 | 2.338E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.705E-08 | 1.085E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.457E-08 | 1.532E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.458E-07 | 7.392E-05 |
|---|
| interphase | GO:0051325 | | 2.872E-07 | 7.677E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.626E-07 | 1.354E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 7.676E-07 | 1.679E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 6.72E-11 | 1.546E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.764E-10 | 3.179E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.684E-09 | 1.291E-06 |
|---|
| spindle organization | GO:0007051 | | 3.282E-09 | 1.887E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 4.397E-09 | 2.023E-06 |
|---|
| cell killing | GO:0001906 | | 1.328E-08 | 5.091E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 7.331E-08 | 2.409E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.863E-08 | 2.261E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.403E-07 | 1.892E-04 |
|---|
| interphase | GO:0051325 | | 8.304E-07 | 1.91E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.2E-06 | 2.508E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 6.72E-11 | 1.546E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.764E-10 | 3.179E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.684E-09 | 1.291E-06 |
|---|
| spindle organization | GO:0007051 | | 3.282E-09 | 1.887E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 4.397E-09 | 2.023E-06 |
|---|
| cell killing | GO:0001906 | | 1.328E-08 | 5.091E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 7.331E-08 | 2.409E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.863E-08 | 2.261E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.403E-07 | 1.892E-04 |
|---|
| interphase | GO:0051325 | | 8.304E-07 | 1.91E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.2E-06 | 2.508E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 6.72E-11 | 1.546E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.764E-10 | 3.179E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.684E-09 | 1.291E-06 |
|---|
| spindle organization | GO:0007051 | | 3.282E-09 | 1.887E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 4.397E-09 | 2.023E-06 |
|---|
| cell killing | GO:0001906 | | 1.328E-08 | 5.091E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 7.331E-08 | 2.409E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.863E-08 | 2.261E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.403E-07 | 1.892E-04 |
|---|
| interphase | GO:0051325 | | 8.304E-07 | 1.91E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.2E-06 | 2.508E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 6.72E-11 | 1.546E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 2.764E-10 | 3.179E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.684E-09 | 1.291E-06 |
|---|
| spindle organization | GO:0007051 | | 3.282E-09 | 1.887E-06 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 4.397E-09 | 2.023E-06 |
|---|
| cell killing | GO:0001906 | | 1.328E-08 | 5.091E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 7.331E-08 | 2.409E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.863E-08 | 2.261E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.403E-07 | 1.892E-04 |
|---|
| interphase | GO:0051325 | | 8.304E-07 | 1.91E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 1.2E-06 | 2.508E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle assembly | GO:0051225 | | 1.202E-10 | 2.853E-07 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.859E-10 | 2.206E-07 |
|---|
| natural killer cell mediated immunity | GO:0002228 | | 1.006E-09 | 7.958E-07 |
|---|
| leukocyte mediated cytotoxicity | GO:0001909 | | 2.628E-09 | 1.559E-06 |
|---|
| spindle organization | GO:0007051 | | 2.87E-09 | 1.362E-06 |
|---|
| cell killing | GO:0001906 | | 7.943E-09 | 3.142E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.708E-08 | 1.596E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 4.981E-08 | 1.477E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.175E-07 | 1.101E-04 |
|---|
| interphase | GO:0051325 | | 4.678E-07 | 1.11E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.038E-06 | 2.238E-04 |
|---|
