Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2671-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1451 | 7.960e-03 | 9.500e-03 | 8.342e-02 |
|---|
| IPC-NIBC-129 | 0.2323 | 3.852e-02 | 4.820e-02 | 3.778e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2593 | 1.104e-02 | 1.683e-02 | 2.792e-01 |
|---|
| Loi_GPL570 | 0.2383 | 7.822e-02 | 7.772e-02 | 3.507e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1708 | 1.600e-05 | 9.800e-05 | 1.540e-04 |
|---|
| Parker_GPL1390 | 0.2772 | 2.080e-01 | 2.192e-01 | 7.409e-01 |
|---|
| Parker_GPL887 | 0.0781 | 7.306e-01 | 7.543e-01 | 7.865e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3335 | 1.215e-01 | 9.167e-02 | 5.807e-01 |
|---|
| Schmidt | 0.2325 | 1.448e-02 | 2.036e-02 | 1.731e-01 |
|---|
| Sotiriou | 0.2925 | 3.320e-03 | 1.035e-03 | 7.638e-02 |
|---|
| Wang | 0.2725 | 9.310e-02 | 6.326e-02 | 3.488e-01 |
|---|
| Zhang | 0.2521 | 2.718e-02 | 1.376e-02 | 7.047e-02 |
|---|
| Zhou | 0.3958 | 7.882e-02 | 8.530e-02 | 4.641e-01 |
|---|
Expression data for subnetwork 2671-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2671-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rdbp |   | 1 | 164 | 270 | 275 | 0.006 | 0.165 | 0.250 | 0.202 | 0.177 | 0.175 | -0.127 | 0.222 | 0.196 | 0.164 | 0.192 | -0.020 | -0.011 |
|---|
| snapc1 | | 2 | 104 | 175 | 174 | -0.061 | 0.155 | 0.094 | 0.099 | 0.087 | 0.156 | 0.313 | 0.085 | 0.117 | 0.038 | 0.139 | 0.260 | -0.222 |
|---|
| cops5 | | 1 | 164 | 270 | 275 | -0.143 | 0.018 | 0.042 | 0.099 | 0.121 | 0.038 | 0.292 | 0.115 | 0.036 | 0.097 | 0.141 | 0.100 | 0.193 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| klc1 | | 1 | 164 | 270 | 275 | -0.077 | 0.129 | 0.005 | -0.017 | 0.042 | 0.319 | -0.266 | -0.126 | -0.027 | -0.004 | 0.123 | 0.034 | 0.140 |
|---|
| tceb1 | | 1 | 164 | 270 | 275 | -0.008 | 0.122 | 0.074 | 0.194 | 0.170 | 0.095 | 0.591 | 0.208 | 0.184 | 0.086 | 0.250 | 0.140 | 0.123 |
|---|
| gfer | | 1 | 164 | 270 | 275 | -0.074 | 0.076 | -0.073 | 0.079 | 0.075 | -0.089 | -0.083 | 0.049 | -0.091 | -0.044 | 0.061 | 0.165 | 0.214 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
| cul2 | | 1 | 164 | 270 | 275 | 0.010 | 0.208 | 0.062 | 0.067 | 0.088 | 0.116 | -0.141 | 0.021 | 0.021 | -0.083 | 0.107 | 0.231 | 0.112 |
|---|
| cobra1 | | 1 | 164 | 270 | 275 | 0.134 | 0.089 | 0.185 | 0.112 | 0.086 | 0.213 | 0.323 | 0.138 | 0.013 | 0.052 | 0.097 | -0.002 | 0.241 |
|---|
| gps1 | | 1 | 164 | 270 | 275 | 0.139 | 0.102 | 0.107 | 0.027 | 0.175 | 0.277 | -0.053 | 0.145 | 0.084 | 0.129 | -0.061 | -0.085 | 0.254 |
|---|
| cand1 | | 1 | 164 | 270 | 275 | 0.154 | 0.122 | 0.159 | -0.036 | 0.124 | 0.135 | -0.185 | 0.117 | 0.008 | 0.162 | 0.158 | 0.150 | 0.391 |
|---|
| polr2h | | 3 | 79 | 175 | 162 | 0.021 | 0.282 | 0.144 | 0.302 | 0.127 | 0.204 | 0.069 | 0.129 | 0.257 | 0.153 | 0.128 | 0.165 | 0.236 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 2671-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 3.313E-07 | 7.62E-04 |
|---|
| interphase | GO:0051325 | | 3.718E-07 | 4.276E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.167E-07 | 4.728E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.299E-07 | 4.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.639E-06 | 7.539E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.639E-06 | 6.282E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.665E-06 | 5.469E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.612E-06 | 7.51E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.802E-06 | 7.162E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.051E-06 | 7.017E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.435E-06 | 7.182E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.873E-09 | 4.575E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.954E-08 | 1.216E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.4E-07 | 1.954E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 5.139E-07 | 3.139E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.756E-07 | 2.812E-04 |
|---|
| axon cargo transport | GO:0008088 | | 7.894E-07 | 3.214E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 9.578E-07 | 3.343E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.247E-06 | 3.809E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.322E-06 | 3.588E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.653E-06 | 4.039E-04 |
|---|
| microtubule-based transport | GO:0010970 | | 2.16E-06 | 4.798E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.864E-09 | 6.892E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.298E-07 | 1.561E-04 |
|---|
| interphase | GO:0051325 | | 1.517E-07 | 1.217E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.384E-07 | 2.035E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.681E-07 | 3.215E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.11E-07 | 3.252E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.026E-06 | 3.527E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.245E-06 | 3.744E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.559E-06 | 4.169E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.655E-06 | 3.983E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.084E-06 | 4.558E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.873E-09 | 4.575E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.954E-08 | 1.216E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.4E-07 | 1.954E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 5.139E-07 | 3.139E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.756E-07 | 2.812E-04 |
|---|
| axon cargo transport | GO:0008088 | | 7.894E-07 | 3.214E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 9.578E-07 | 3.343E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.247E-06 | 3.809E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.322E-06 | 3.588E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 1.653E-06 | 4.039E-04 |
|---|
| microtubule-based transport | GO:0010970 | | 2.16E-06 | 4.798E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.864E-09 | 6.892E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.298E-07 | 1.561E-04 |
|---|
| interphase | GO:0051325 | | 1.517E-07 | 1.217E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.384E-07 | 2.035E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.681E-07 | 3.215E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.11E-07 | 3.252E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.026E-06 | 3.527E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.245E-06 | 3.744E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.559E-06 | 4.169E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.655E-06 | 3.983E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.084E-06 | 4.558E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 7.119E-08 | 2.542E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.456E-07 | 2.599E-04 |
|---|
| signalosome | GO:0008180 | | 1.523E-07 | 1.813E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.921E-07 | 1.715E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.093E-07 | 1.495E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.703E-07 | 1.609E-04 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 4.608E-07 | 2.351E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.078E-07 | 2.713E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 6.492E-07 | 2.576E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 7.384E-07 | 2.637E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 7.863E-07 | 2.553E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.484E-08 | 5.413E-05 |
|---|
| interphase | GO:0051325 | | 1.679E-08 | 3.063E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.948E-08 | 6.017E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.493E-08 | 6.834E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.12E-08 | 6.654E-05 |
|---|
| signalosome | GO:0008180 | | 1.059E-07 | 6.438E-05 |
|---|
| centriole | GO:0005814 | | 1.455E-07 | 7.583E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.455E-07 | 6.635E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.837E-07 | 7.447E-05 |
|---|
| midbody | GO:0030496 | | 1.939E-07 | 7.073E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.204E-07 | 1.062E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.864E-09 | 6.892E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.298E-07 | 1.561E-04 |
|---|
| interphase | GO:0051325 | | 1.517E-07 | 1.217E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.384E-07 | 2.035E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.681E-07 | 3.215E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.11E-07 | 3.252E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.026E-06 | 3.527E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.245E-06 | 3.744E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.559E-06 | 4.169E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.655E-06 | 3.983E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.084E-06 | 4.558E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.313E-07 | 7.62E-04 |
|---|
| interphase | GO:0051325 | | 3.718E-07 | 4.276E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.167E-07 | 4.728E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.299E-07 | 4.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.639E-06 | 7.539E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.639E-06 | 6.282E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.665E-06 | 5.469E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.612E-06 | 7.51E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.802E-06 | 7.162E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.051E-06 | 7.017E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.435E-06 | 7.182E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.313E-07 | 7.62E-04 |
|---|
| interphase | GO:0051325 | | 3.718E-07 | 4.276E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.167E-07 | 4.728E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.299E-07 | 4.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.639E-06 | 7.539E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.639E-06 | 6.282E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.665E-06 | 5.469E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.612E-06 | 7.51E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.802E-06 | 7.162E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.051E-06 | 7.017E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.435E-06 | 7.182E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.313E-07 | 7.62E-04 |
|---|
| interphase | GO:0051325 | | 3.718E-07 | 4.276E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.167E-07 | 4.728E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.299E-07 | 4.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.639E-06 | 7.539E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.639E-06 | 6.282E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.665E-06 | 5.469E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.612E-06 | 7.51E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.802E-06 | 7.162E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.051E-06 | 7.017E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.435E-06 | 7.182E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.313E-07 | 7.62E-04 |
|---|
| interphase | GO:0051325 | | 3.718E-07 | 4.276E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.167E-07 | 4.728E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.299E-07 | 4.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.639E-06 | 7.539E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.639E-06 | 6.282E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.665E-06 | 5.469E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.612E-06 | 7.51E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.802E-06 | 7.162E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 3.051E-06 | 7.017E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.435E-06 | 7.182E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.617E-07 | 6.209E-04 |
|---|
| interphase | GO:0051325 | | 2.933E-07 | 3.48E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.918E-07 | 4.681E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.161E-07 | 4.248E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.361E-06 | 6.458E-04 |
|---|
| axon cargo transport | GO:0008088 | | 1.361E-06 | 5.382E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.529E-06 | 5.183E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 2.534E-06 | 7.516E-04 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.884E-06 | 7.603E-04 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 3.076E-06 | 7.298E-04 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.709E-06 | 8.001E-04 |
|---|
