Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2068-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1965 | 3.737e-03 | 4.428e-03 | 4.641e-02 |
|---|
| IPC-NIBC-129 | 0.2753 | 2.921e-02 | 3.580e-02 | 3.071e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2958 | 1.171e-02 | 1.774e-02 | 2.890e-01 |
|---|
| Loi_GPL570 | 0.2356 | 4.346e-02 | 4.312e-02 | 2.296e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1435 | 4.000e-06 | 3.000e-05 | 2.000e-05 |
|---|
| Parker_GPL1390 | 0.2971 | 1.031e-01 | 1.031e-01 | 5.488e-01 |
|---|
| Parker_GPL887 | 0.0767 | 7.361e-01 | 7.595e-01 | 7.921e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3119 | 9.763e-02 | 7.113e-02 | 5.109e-01 |
|---|
| Schmidt | 0.2515 | 9.184e-03 | 1.317e-02 | 1.224e-01 |
|---|
| Sotiriou | 0.3204 | 1.451e-03 | 3.630e-04 | 4.181e-02 |
|---|
| Wang | 0.2393 | 1.441e-01 | 1.053e-01 | 4.605e-01 |
|---|
| Zhang | 0.2735 | 4.431e-02 | 2.471e-02 | 1.133e-01 |
|---|
| Zhou | 0.4455 | 9.659e-02 | 1.063e-01 | 5.386e-01 |
|---|
Expression data for subnetwork 2068-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2068-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrm2 |   | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| orc6l | | 8 | 33 | 73 | 61 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.086 | 0.175 | 0.160 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| map4 | | 16 | 13 | 73 | 55 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.108 | -0.074 | 0.302 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| ercc2 | | 1 | 164 | 108 | 124 | 0.056 | 0.139 | 0.033 | -0.050 | 0.068 | -0.089 | -0.328 | -0.014 | 0.063 | 0.034 | 0.116 | -0.058 | 0.292 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
GO Enrichment output for subnetwork 2068-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.783E-09 | 2.02E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.152E-08 | 5.925E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 9.008E-08 | 6.906E-05 |
|---|
| response to UV | GO:0009411 | | 5.096E-07 | 2.93E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.554E-03 |
|---|
| response to light stimulus | GO:0009416 | | 9.887E-06 | 3.79E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 6.434E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 5.63E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 6.299E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.465E-05 | 5.669E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.935E-05 | 6.136E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.466E-10 | 2.068E-06 |
|---|
| response to UV | GO:0009411 | | 1.022E-07 | 1.248E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.975E-06 | 4.866E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.076E-06 | 3.711E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.496E-06 | 3.174E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 8.37E-06 | 3.408E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.959E-06 | 3.127E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 1.254E-05 | 3.828E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.254E-05 | 3.403E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 4.081E-03 |
|---|
| transcription-coupled nucleotide-excision repair | GO:0006283 | | 1.671E-05 | 3.71E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.802E-08 | 3.371E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.716E-08 | 5.386E-05 |
|---|
| response to UV | GO:0009411 | | 1.964E-07 | 1.182E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.221E-06 | 5.875E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 3.168E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.185E-05 | 2.851E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 1.874E-05 | 4.1E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.466E-10 | 2.068E-06 |
|---|
| response to UV | GO:0009411 | | 1.022E-07 | 1.248E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.975E-06 | 4.866E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.076E-06 | 3.711E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.496E-06 | 3.174E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 8.37E-06 | 3.408E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.959E-06 | 3.127E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 1.254E-05 | 3.828E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 1.254E-05 | 3.403E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.671E-05 | 4.081E-03 |
|---|
| transcription-coupled nucleotide-excision repair | GO:0006283 | | 1.671E-05 | 3.71E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.802E-08 | 3.371E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.716E-08 | 5.386E-05 |
|---|
| response to UV | GO:0009411 | | 1.964E-07 | 1.182E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.221E-06 | 5.875E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 3.168E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.185E-05 | 2.851E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 1.874E-05 | 4.1E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.533E-11 | 1.976E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.667E-10 | 2.977E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 5.971E-10 | 7.107E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 1.54E-09 | 1.375E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 1.236E-05 |
|---|
| response to UV | GO:0009411 | | 3.502E-08 | 2.084E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 5.723E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.004E-06 | 4.481E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.243E-06 | 4.932E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.759E-06 | 1.342E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.618E-06 | 1.499E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.578E-11 | 3.494E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.653E-11 | 1.761E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.627E-10 | 4.41E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 7.474E-10 | 6.816E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 8.208E-06 |
|---|
| response to UV | GO:0009411 | | 1.422E-08 | 8.644E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 5.846E-05 |
|---|
| response to light stimulus | GO:0009416 | | 3.672E-07 | 1.674E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.191E-06 | 4.827E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.302E-06 | 4.75E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.116E-06 | 7.018E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.327E-09 | 5.599E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.802E-08 | 3.371E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.716E-08 | 5.386E-05 |
|---|
| response to UV | GO:0009411 | | 1.964E-07 | 1.182E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.221E-06 | 5.875E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.937E-06 | 3.584E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.937E-06 | 3.072E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.108E-05 | 3.334E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.185E-05 | 3.168E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 1.185E-05 | 2.851E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 1.874E-05 | 4.1E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.152E-08 | 5.925E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 9.008E-08 | 6.906E-05 |
|---|
| response to UV | GO:0009411 | | 5.096E-07 | 2.93E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.554E-03 |
|---|
| response to light stimulus | GO:0009416 | | 9.887E-06 | 3.79E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 6.434E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 5.63E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 6.299E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.465E-05 | 5.669E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.935E-05 | 6.136E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.152E-08 | 5.925E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 9.008E-08 | 6.906E-05 |
|---|
| response to UV | GO:0009411 | | 5.096E-07 | 2.93E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.554E-03 |
|---|
| response to light stimulus | GO:0009416 | | 9.887E-06 | 3.79E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 6.434E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 5.63E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 6.299E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.465E-05 | 5.669E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.935E-05 | 6.136E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.152E-08 | 5.925E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 9.008E-08 | 6.906E-05 |
|---|
| response to UV | GO:0009411 | | 5.096E-07 | 2.93E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.554E-03 |
|---|
| response to light stimulus | GO:0009416 | | 9.887E-06 | 3.79E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 6.434E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 5.63E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 6.299E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.465E-05 | 5.669E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.935E-05 | 6.136E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 5.152E-08 | 5.925E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 9.008E-08 | 6.906E-05 |
|---|
| response to UV | GO:0009411 | | 5.096E-07 | 2.93E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.554E-03 |
|---|
| response to light stimulus | GO:0009416 | | 9.887E-06 | 3.79E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 6.434E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 5.63E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 6.299E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.465E-05 | 5.669E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.935E-05 | 6.136E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.552E-09 | 2.029E-05 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 7.782E-08 | 9.233E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 1.244E-07 | 9.839E-05 |
|---|
| response to UV | GO:0009411 | | 4.616E-07 | 2.738E-04 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.378E-06 | 1.603E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.77E-05 | 7.002E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.473E-05 | 8.383E-03 |
|---|
| epidermal cell differentiation | GO:0009913 | | 2.473E-05 | 7.335E-03 |
|---|
| nucleotide-excision repair. DNA incision | GO:0033683 | | 2.653E-05 | 6.996E-03 |
|---|
| transcription-coupled nucleotide-excision repair | GO:0006283 | | 2.653E-05 | 6.297E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.653E-05 | 5.724E-03 |
|---|
