Study VanDeVijver-ER-neg

Study informations

122 subnetworks in total page | file

1481 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 658

score

Dataset	Score	P-val 1	P-val 2	P-val 3	Fisher Score
Desmedt	0.2965	6.948e-03	3.290e-04	3.039e-01	6.946e-07
IPC	0.4022	2.494e-01	1.009e-01	9.141e-01	2.300e-02
Loi	0.4394	2.840e-04	0.000e+00	7.459e-02	0.000e+00
Schmidt	0.6209	0.000e+00	0.000e+00	7.546e-02	0.000e+00
Wang	0.2391	1.533e-02	1.022e-01	3.143e-01	4.924e-04

Expression data for subnetwork 658 in each dataset

Desmedt | IPC | Loi | Schmidt | Wang |

Subnetwork structure for each dataset

Desmedt IPC Loi Schmidt Wang

Desmedt

Score for each gene in subnetwork 658 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC	Loi	Schmidt	Wang
AKT1		13	47	444	430	-0.012	0.045	0.126	-0.099	-0.168
LCN2		6	120	797	779	0.316	0.113	0.145	-0.098	-0.284
EGF		11	59	398	383	-0.009	-0.212	0.182	-0.276	0.005
CEBPA		3	265	1052	1036	0.080	-0.058	0.005	-0.100	0.039
PAK4		1	652	1103	1108	-0.130	-0.066	0.084	-0.282	-0.072
RASA1		9	77	492	494	0.237	-0.079	0.146	0.127	0.149
MAP1B		13	47	148	148	0.118	-0.123	0.263	-0.107	0.100
HAPLN1		3	265	1103	1080	0.119	0.064	0.036	0.176	0.226
MUC1		39	11	1	7	0.215	0.063	0.214	-0.190	-0.132
CDC42		44	9	1	6	0.036	0.047	0.242	-0.027	-0.042
CDH1		54	5	1	4	0.211	-0.227	0.187	-0.236	-0.024
SH3RF1		14	42	117	120	undef	0.144	0.238	undef	undef
MMP2		7	100	797	778	0.207	-0.105	0.186	-0.024	0.162
CDH3		10	67	1	16	0.088	0.028	0.169	-0.055	-0.027
GSK3B		47	7	33	28	0.117	-0.130	0.292	-0.129	0.057
ACADM		1	652	1103	1108	0.048	-0.012	0.055	0.047	0.146
HSP90AA1		10	67	1	16	0.321	-0.143	0.104	0.123	-0.054

GO Enrichment output for subnetwork 658 in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		3.672E-08	8.445E-05
positive regulation of pseudopodium assembly	GO:0031274		3.672E-08	4.222E-05
macrophage differentiation	GO:0030225		7.335E-08	5.624E-05
regulation of lipid kinase activity	GO:0043550		1.282E-07	7.373E-05
establishment of nucleus localization	GO:0040023		1.282E-07	5.899E-05
nucleus localization	GO:0051647		3.071E-07	1.177E-04
regulation of cell projection assembly	GO:0060491		4.382E-07	1.44E-04
filopodium assembly	GO:0046847		6.019E-07	1.731E-04
microspike assembly	GO:0030035		8.017E-07	2.049E-04
regulation of protein complex assembly	GO:0043254		1.575E-06	3.623E-04
peptidyl-serine phosphorylation	GO:0018105		1.653E-06	3.456E-04

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		1.904E-08	4.652E-05
positive regulation of pseudopodium assembly	GO:0031274		1.904E-08	2.326E-05
regulation of lipid kinase activity	GO:0043550		5.324E-08	4.336E-05
establishment of nucleus localization	GO:0040023		5.324E-08	3.252E-05
macrophage differentiation	GO:0030225		7.981E-08	3.899E-05
nucleus localization	GO:0051647		1.565E-07	6.374E-05
regulation of cell projection assembly	GO:0060491		2.086E-07	7.28E-05
regulation of protein complex assembly	GO:0043254		5.057E-07	1.544E-04
filopodium assembly	GO:0046847		6.425E-07	1.744E-04
myeloid cell differentiation	GO:0030099		6.489E-07	1.585E-04
positive regulation of nitric oxide biosynthetic process	GO:0045429		7.704E-07	1.711E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		2.392E-08	5.754E-05
positive regulation of pseudopodium assembly	GO:0031274		2.392E-08	2.877E-05
regulation of lipid kinase activity	GO:0043550		4.182E-08	3.354E-05
macrophage differentiation	GO:0030225		4.182E-08	2.516E-05
establishment of nucleus localization	GO:0040023		6.686E-08	3.218E-05
nucleus localization	GO:0051647		1.966E-07	7.883E-05
regulation of cell projection assembly	GO:0060491		2.619E-07	9.002E-05
regulation of protein complex assembly	GO:0043254		5.963E-07	1.793E-04
filopodium assembly	GO:0046847		6.647E-07	1.777E-04
myeloid cell differentiation	GO:0030099		7.712E-07	1.856E-04
positive regulation of nitric oxide biosynthetic process	GO:0045429		8.065E-07	1.764E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		3.672E-08	8.445E-05
positive regulation of pseudopodium assembly	GO:0031274		3.672E-08	4.222E-05
macrophage differentiation	GO:0030225		7.335E-08	5.624E-05
regulation of lipid kinase activity	GO:0043550		1.282E-07	7.373E-05
establishment of nucleus localization	GO:0040023		1.282E-07	5.899E-05
nucleus localization	GO:0051647		3.071E-07	1.177E-04
regulation of cell projection assembly	GO:0060491		4.382E-07	1.44E-04
filopodium assembly	GO:0046847		6.019E-07	1.731E-04
microspike assembly	GO:0030035		8.017E-07	2.049E-04
regulation of protein complex assembly	GO:0043254		1.575E-06	3.623E-04
peptidyl-serine phosphorylation	GO:0018105		1.653E-06	3.456E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		3.672E-08	8.445E-05
positive regulation of pseudopodium assembly	GO:0031274		3.672E-08	4.222E-05
macrophage differentiation	GO:0030225		7.335E-08	5.624E-05
regulation of lipid kinase activity	GO:0043550		1.282E-07	7.373E-05
establishment of nucleus localization	GO:0040023		1.282E-07	5.899E-05
nucleus localization	GO:0051647		3.071E-07	1.177E-04
regulation of cell projection assembly	GO:0060491		4.382E-07	1.44E-04
filopodium assembly	GO:0046847		6.019E-07	1.731E-04
microspike assembly	GO:0030035		8.017E-07	2.049E-04
regulation of protein complex assembly	GO:0043254		1.575E-06	3.623E-04
peptidyl-serine phosphorylation	GO:0018105		1.653E-06	3.456E-04