Study VanDeVijver-ER-neg
Study informations
122 subnetworks in total page | file
1481 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1259
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| Desmedt | 0.3363 | 1.316e-03 | 2.100e-05 | 1.531e-01 | 4.230e-09 |
|---|
| IPC | 0.3232 | 3.777e-01 | 2.045e-01 | 9.416e-01 | 7.271e-02 |
|---|
| Loi | 0.4868 | 3.400e-05 | 0.000e+00 | 4.834e-02 | 0.000e+00 |
|---|
| Schmidt | 0.5974 | 1.000e-06 | 0.000e+00 | 1.182e-01 | 0.000e+00 |
|---|
| Wang | 0.2541 | 8.675e-03 | 7.177e-02 | 2.437e-01 | 1.517e-04 |
|---|
Expression data for subnetwork 1259 in each dataset
Desmedt |
IPC |
Loi |
Schmidt |
Wang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1259 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC | Loi | Schmidt | Wang |
|---|
| LCN2 |   | 6 | 120 | 797 | 779 | 0.316 | 0.113 | 0.145 | -0.098 | -0.284 |
|---|
| PIK3R1 | | 91 | 1 | 1 | 1 | 0.189 | -0.237 | 0.381 | 0.065 | -0.002 |
|---|
| COL7A1 | | 2 | 391 | 1135 | 1135 | 0.054 | -0.052 | 0.240 | 0.233 | 0.022 |
|---|
| ID4 | | 13 | 47 | 444 | 430 | -0.060 | -0.179 | 0.137 | 0.241 | 0.036 |
|---|
| OSBPL10 | | 2 | 391 | 283 | 301 | 0.028 | -0.116 | 0.239 | 0.026 | 0.035 |
|---|
| ATP5B | | 2 | 391 | 326 | 344 | 0.167 | -0.059 | -0.003 | 0.107 | 0.003 |
|---|
| RPL10A | | 2 | 391 | 1135 | 1135 | 0.068 | 0.176 | 0.061 | 0.219 | -0.024 |
|---|
| EGFR | | 72 | 2 | 117 | 117 | 0.064 | -0.195 | 0.240 | -0.205 | 0.065 |
|---|
| FGFR1 | | 41 | 10 | 129 | 123 | 0.205 | -0.036 | 0.200 | 0.087 | -0.015 |
|---|
| ATP5D | | 1 | 652 | 1135 | 1138 | 0.114 | 0.142 | 0.027 | 0.002 | 0.040 |
|---|
| MUC1 | | 39 | 11 | 1 | 7 | 0.215 | 0.063 | 0.214 | -0.190 | -0.132 |
|---|
| CDH1 | | 54 | 5 | 1 | 4 | 0.211 | -0.227 | 0.187 | -0.236 | -0.024 |
|---|
| IL7R | | 14 | 42 | 339 | 334 | 0.130 | -0.151 | -0.112 | -0.130 | -0.160 |
|---|
| MMP2 | | 7 | 100 | 797 | 778 | 0.207 | -0.105 | 0.186 | -0.024 | 0.162 |
|---|
| ACAN | | 4 | 198 | 797 | 792 | -0.060 | 0.156 | 0.132 | -0.024 | -0.083 |
|---|
| POLR1B | | 11 | 59 | 129 | 126 | 0.157 | 0.062 | -0.036 | -0.079 | 0.139 |
|---|
| MMP13 | | 3 | 265 | 797 | 793 | -0.023 | 0.162 | 0.112 | -0.115 | 0.177 |
|---|
| LAMC2 | | 2 | 391 | 1135 | 1135 | -0.037 | -0.063 | 0.307 | -0.060 | 0.055 |
|---|
| CAV2 | | 52 | 6 | 117 | 118 | 0.380 | -0.013 | 0.165 | 0.065 | 0.101 |
|---|
GO Enrichment output for subnetwork 1259 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 |  | 1.053E-05 | 0.02421756 |
|---|
| collagen catabolic process | GO:0030574 | | 1.053E-05 | 0.01210878 |
|---|
| response to hypoxia | GO:0001666 | | 1.756E-05 | 0.01346191 |
|---|
| response to oxygen levels | GO:0070482 | | 1.958E-05 | 0.01125705 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.38E-05 | 0.01094755 |
|---|
| collagen metabolic process | GO:0032963 | | 3.694E-05 | 0.01416058 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 4.582E-05 | 0.01505455 |
|---|
| negative regulation of gliogenesis | GO:0014014 | | 4.582E-05 | 0.01317273 |
|---|
| negative regulation of T cell mediated immunity | GO:0002710 | | 4.582E-05 | 0.0117091 |
|---|
| positive regulation of microtubule polymerization | GO:0031116 | | 4.582E-05 | 0.01053819 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.942E-05 | 0.01033315 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 4.324E-06 | 0.01056262 |
|---|
| collagen catabolic process | GO:0030574 | | 4.324E-06 | 5.281E-03 |
|---|
| response to hypoxia | GO:0001666 | | 7.256E-06 | 5.909E-03 |
|---|
| response to oxygen levels | GO:0070482 | | 7.997E-06 | 4.884E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 9.448E-06 | 4.616E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.593E-05 | 6.488E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 2.096E-05 | 7.315E-03 |
|---|
| regulation of phospholipase A2 activity | GO:0032429 | | 2.259E-05 | 6.898E-03 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 2.259E-05 | 6.131E-03 |
|---|
| negative regulation of T cell mediated immunity | GO:0002710 | | 2.259E-05 | 5.518E-03 |
|---|
| protein insertion into membrane | GO:0051205 | | 2.259E-05 | 5.017E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 5.11E-06 | 0.01229468 |
|---|
| collagen catabolic process | GO:0030574 | | 5.955E-06 | 7.163E-03 |
|---|
| response to hypoxia | GO:0001666 | | 1.102E-05 | 8.838E-03 |
|---|
| response to oxygen levels | GO:0070482 | | 1.214E-05 | 7.303E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 1.3E-05 | 6.257E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 1.989E-05 | 7.974E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 2.638E-05 | 9.067E-03 |
|---|
| regulation of phospholipase A2 activity | GO:0032429 | | 2.802E-05 | 8.428E-03 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 2.802E-05 | 7.492E-03 |
|---|
| negative regulation of T cell mediated immunity | GO:0002710 | | 2.802E-05 | 6.742E-03 |
|---|
| energy coupled proton transport. down electrochemical gradient | GO:0015985 | | 3.413E-05 | 7.465E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.053E-05 | 0.02421756 |
|---|
| collagen catabolic process | GO:0030574 | | 1.053E-05 | 0.01210878 |
|---|
| response to hypoxia | GO:0001666 | | 1.756E-05 | 0.01346191 |
|---|
| response to oxygen levels | GO:0070482 | | 1.958E-05 | 0.01125705 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.38E-05 | 0.01094755 |
|---|
| collagen metabolic process | GO:0032963 | | 3.694E-05 | 0.01416058 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 4.582E-05 | 0.01505455 |
|---|
| negative regulation of gliogenesis | GO:0014014 | | 4.582E-05 | 0.01317273 |
|---|
| negative regulation of T cell mediated immunity | GO:0002710 | | 4.582E-05 | 0.0117091 |
|---|
| positive regulation of microtubule polymerization | GO:0031116 | | 4.582E-05 | 0.01053819 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.942E-05 | 0.01033315 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.053E-05 | 0.02421756 |
|---|
| collagen catabolic process | GO:0030574 | | 1.053E-05 | 0.01210878 |
|---|
| response to hypoxia | GO:0001666 | | 1.756E-05 | 0.01346191 |
|---|
| response to oxygen levels | GO:0070482 | | 1.958E-05 | 0.01125705 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.38E-05 | 0.01094755 |
|---|
| collagen metabolic process | GO:0032963 | | 3.694E-05 | 0.01416058 |
|---|
| positive regulation of vasoconstriction | GO:0045907 | | 4.582E-05 | 0.01505455 |
|---|
| negative regulation of gliogenesis | GO:0014014 | | 4.582E-05 | 0.01317273 |
|---|
| negative regulation of T cell mediated immunity | GO:0002710 | | 4.582E-05 | 0.0117091 |
|---|
| positive regulation of microtubule polymerization | GO:0031116 | | 4.582E-05 | 0.01053819 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.942E-05 | 0.01033315 |
|---|
