Study VanDeVijver-ER-neg

Study informations

122 subnetworks in total page | file

1481 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1013

score

Dataset	Score	P-val 1	P-val 2	P-val 3	Fisher Score
Desmedt	0.3402	1.100e-03	1.600e-05	1.415e-01	2.491e-09
IPC	0.3404	3.495e-01	1.790e-01	9.358e-01	5.854e-02
Loi	0.4598	1.170e-04	0.000e+00	6.226e-02	0.000e+00
Schmidt	0.5824	2.000e-06	0.000e+00	1.528e-01	0.000e+00
Wang	0.2541	8.698e-03	7.188e-02	2.440e-01	1.525e-04

Expression data for subnetwork 1013 in each dataset

Desmedt | IPC | Loi | Schmidt | Wang |

Subnetwork structure for each dataset

Desmedt IPC Loi Schmidt Wang

Desmedt

Score for each gene in subnetwork 1013 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC	Loi	Schmidt	Wang
FHL2		5	148	206	202	0.033	0.143	0.239	-0.033	0.294
TP53		28	15	1	9	0.015	-0.167	0.148	-0.027	0.147
VEGFA		28	15	57	49	-0.074	0.090	0.200	0.030	0.148
ALCAM		4	198	1276	1276	0.206	-0.208	0.193	0.067	-0.010
EGFR		72	2	117	117	0.064	-0.195	0.240	-0.205	0.065
ZFYVE9		1	652	1406	1407	-0.070	-0.247	0.042	-0.003	0.054
RERE		4	198	634	615	0.077	-0.284	0.209	-0.027	0.074
FAM173A		3	265	1325	1319	0.118	0.125	-0.114	-0.218	0.169
ZNF232		5	148	57	63	0.010	0.048	-0.040	0.189	0.159
CCNA2		15	40	148	144	-0.097	0.176	-0.053	0.188	0.246
ECM1		1	652	1406	1407	0.197	0.107	0.148	-0.144	0.048
SH2D1A		2	391	584	578	-0.074	-0.078	-0.261	-0.082	-0.033
CCNA1		17	30	326	314	-0.078	0.174	0.092	0.078	-0.098
RHO		1	652	1406	1407	0.075	-0.033	-0.036	-0.118	-0.081
ZMYND8		1	652	1406	1407	0.178	-0.140	0.259	-0.112	0.011
FHL1		3	265	1292	1278	0.136	-0.041	0.104	0.301	0.266
CDK2		16	34	129	124	-0.104	0.196	-0.096	0.109	0.362
TGFB1I1		16	34	326	315	0.176	-0.105	0.229	0.143	0.298

GO Enrichment output for subnetwork 1013 in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
protein import into nucleus. translocation	GO:0000060		2.216E-05	0.05095657
protein import into nucleus	GO:0006606		3.532E-05	0.0406179
nuclear import	GO:0051170		3.724E-05	0.0285519
protein localization in nucleus	GO:0034504		4.802E-05	0.02761085
negative regulation of bone resorption	GO:0045779		6.161E-05	0.02834218
SMAD protein complex assembly	GO:0007183		6.161E-05	0.02361848
regulation of mitochondrial membrane permeability	GO:0046902		6.161E-05	0.02024441
phototransduction. visible light	GO:0007603		6.161E-05	0.01771386
traversing start control point of mitotic cell cycle	GO:0007089		6.161E-05	0.01574565
positive regulation of blood vessel endothelial cell migration	GO:0043536		6.161E-05	0.01417109
DNA damage checkpoint	GO:0000077		6.365E-05	0.013309

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
protein import into nucleus. translocation	GO:0000060		1.077E-05	0.02630439
protein import into nucleus	GO:0006606		1.242E-05	0.01517145
nuclear import	GO:0051170		1.303E-05	0.01061281
protein localization in nucleus	GO:0034504		1.718E-05	0.0104949
negative regulation of bone resorption	GO:0045779		2.887E-05	0.0141082
regulation of mitochondrial membrane permeability	GO:0046902		2.887E-05	0.01175684
regulation of phospholipase A2 activity	GO:0032429		2.887E-05	0.01007729
G2/M transition checkpoint	GO:0031576		2.887E-05	8.818E-03
positive regulation of blood vessel endothelial cell migration	GO:0043536		2.887E-05	7.838E-03
protein insertion into membrane	GO:0051205		2.887E-05	7.054E-03
DNA damage checkpoint	GO:0000077		3.027E-05	6.722E-03

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
protein import into nucleus. translocation	GO:0000060		1.199E-05	0.02884163
protein import into nucleus	GO:0006606		1.526E-05	0.01835864
nuclear import	GO:0051170		1.603E-05	0.01285715
protein localization in nucleus	GO:0034504		2.127E-05	0.01279475
DNA damage checkpoint	GO:0000077		3.193E-05	0.01536593
negative regulation of bone resorption	GO:0045779		3.384E-05	0.01356838
regulation of mitochondrial membrane permeability	GO:0046902		3.384E-05	0.01163004
traversing start control point of mitotic cell cycle	GO:0007089		3.384E-05	0.01017628
regulation of phospholipase A2 activity	GO:0032429		3.384E-05	9.046E-03
positive regulation of blood vessel endothelial cell migration	GO:0043536		3.384E-05	8.141E-03
DNA integrity checkpoint	GO:0031570		4.162E-05	9.104E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
protein import into nucleus. translocation	GO:0000060		2.216E-05	0.05095657
protein import into nucleus	GO:0006606		3.532E-05	0.0406179
nuclear import	GO:0051170		3.724E-05	0.0285519
protein localization in nucleus	GO:0034504		4.802E-05	0.02761085
negative regulation of bone resorption	GO:0045779		6.161E-05	0.02834218
SMAD protein complex assembly	GO:0007183		6.161E-05	0.02361848
regulation of mitochondrial membrane permeability	GO:0046902		6.161E-05	0.02024441
phototransduction. visible light	GO:0007603		6.161E-05	0.01771386
traversing start control point of mitotic cell cycle	GO:0007089		6.161E-05	0.01574565
positive regulation of blood vessel endothelial cell migration	GO:0043536		6.161E-05	0.01417109
DNA damage checkpoint	GO:0000077		6.365E-05	0.013309

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
protein import into nucleus. translocation	GO:0000060		2.216E-05	0.05095657
protein import into nucleus	GO:0006606		3.532E-05	0.0406179
nuclear import	GO:0051170		3.724E-05	0.0285519
protein localization in nucleus	GO:0034504		4.802E-05	0.02761085
negative regulation of bone resorption	GO:0045779		6.161E-05	0.02834218
SMAD protein complex assembly	GO:0007183		6.161E-05	0.02361848
regulation of mitochondrial membrane permeability	GO:0046902		6.161E-05	0.02024441
phototransduction. visible light	GO:0007603		6.161E-05	0.01771386
traversing start control point of mitotic cell cycle	GO:0007089		6.161E-05	0.01574565
positive regulation of blood vessel endothelial cell migration	GO:0043536		6.161E-05	0.01417109
DNA damage checkpoint	GO:0000077		6.365E-05	0.013309