Study Desmedt-ER-pos
Study informations
6 subnetworks in total page | file
175 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 121
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.6327 | 2.377e-02 | 6.800e-03 | 8.742e-01 | 1.413e-04 |
|---|
| Loi | 0.4987 | 2.000e-06 | 0.000e+00 | 3.057e-02 | 0.000e+00 |
|---|
| Schmidt | 0.4218 | 2.137e-03 | 1.650e-04 | 8.263e-01 | 2.913e-07 |
|---|
| VanDeVijver | 0.6061 | 1.000e-06 | 2.000e-06 | 3.202e-01 | 6.404e-13 |
|---|
| Wang | 0.2792 | 1.057e-03 | 2.601e-02 | 2.989e-01 | 8.219e-06 |
|---|
Expression data for subnetwork 121 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 121 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| USP4 |   | 1 | 25 | 89 | 92 | 0.100 | 0.065 | 0.078 | -0.110 | -0.049 |
|---|
| CROT | | 1 | 25 | 89 | 92 | 0.093 | 0.034 | 0.018 | -0.132 | -0.109 |
|---|
| RIF1 | | 2 | 9 | 1 | 4 | 0.053 | -0.056 | -0.038 | undef | 0.085 |
|---|
| SLC2A1 | | 1 | 25 | 89 | 92 | 0.095 | 0.067 | 0.073 | 0.147 | 0.144 |
|---|
| KIAA1377 | | 1 | 25 | 89 | 92 | -0.131 | 0.058 | undef | -0.175 | undef |
|---|
| CCNB1 | | 1 | 25 | 89 | 92 | 0.147 | 0.239 | 0.124 | undef | 0.249 |
|---|
| PRKCA | | 1 | 25 | 89 | 92 | -0.063 | -0.034 | -0.115 | 0.022 | -0.089 |
|---|
| PDGFB | | 1 | 25 | 89 | 92 | -0.078 | 0.009 | 0.020 | 0.225 | 0.094 |
|---|
| SLC1A1 | | 1 | 25 | 89 | 92 | -0.088 | 0.140 | -0.066 | -0.080 | 0.097 |
|---|
| THBS1 | | 1 | 25 | 89 | 92 | 0.162 | -0.014 | -0.065 | 0.051 | 0.009 |
|---|
| CSF3R | | 1 | 25 | 89 | 92 | 0.084 | 0.012 | -0.034 | undef | -0.058 |
|---|
| LTBR | | 1 | 25 | 89 | 92 | 0.051 | 0.002 | -0.016 | 0.116 | 0.105 |
|---|
| TCHP | | 1 | 25 | 89 | 92 | 0.136 | 0.022 | undef | undef | undef |
|---|
| APLP1 | | 1 | 25 | 89 | 92 | 0.009 | 0.149 | 0.091 | 0.072 | 0.050 |
|---|
| SPP1 | | 3 | 3 | 61 | 61 | 0.208 | 0.125 | -0.007 | 0.140 | 0.149 |
|---|
| ZNF24 | | 1 | 25 | 89 | 92 | -0.019 | 0.110 | 0.002 | -0.029 | -0.176 |
|---|
| ALDOC | | 1 | 25 | 89 | 92 | 0.032 | 0.048 | 0.033 | 0.133 | 0.075 |
|---|
| LAD1 | | 1 | 25 | 89 | 92 | 0.087 | -0.003 | 0.180 | 0.177 | 0.027 |
|---|
| AGA | | 1 | 25 | 89 | 92 | 0.176 | 0.032 | -0.060 | -0.082 | -0.080 |
|---|
| MSI2 | | 1 | 25 | 89 | 92 | 0.135 | 0.018 | undef | undef | undef |
|---|
| KRT5 | | 2 | 9 | 89 | 89 | -0.123 | -0.061 | -0.098 | 0.163 | -0.043 |
|---|
| NR6A1 | | 1 | 25 | 89 | 92 | 0.027 | -0.050 | -0.045 | -0.032 | 0.092 |
|---|
| ALOX12 | | 1 | 25 | 89 | 92 | -0.173 | 0.012 | -0.053 | 0.151 | -0.059 |
|---|
| ATF3 | | 2 | 9 | 1 | 4 | -0.016 | 0.092 | -0.045 | undef | -0.079 |
|---|
| WRN | | 1 | 25 | 89 | 92 | 0.159 | 0.047 | -0.045 | -0.122 | 0.142 |
|---|
| BRCA1 | | 2 | 9 | 61 | 65 | 0.179 | 0.175 | 0.134 | 0.041 | 0.094 |
|---|
| CSF2 | | 2 | 9 | 61 | 65 | 0.109 | -0.136 | 0.007 | 0.096 | -0.027 |
|---|
| CD40 | | 3 | 3 | 45 | 45 | -0.128 | -0.042 | -0.077 | 0.174 | -0.053 |
|---|
| NGFR | | 2 | 9 | 89 | 89 | -0.125 | -0.001 | -0.078 | 0.167 | -0.034 |
|---|
| SYT1 | | 1 | 25 | 89 | 92 | 0.174 | 0.145 | 0.005 | 0.054 | 0.006 |
|---|
| CDC45 | | 3 | 3 | 61 | 61 | 0.124 | 0.160 | 0.192 | 0.261 | 0.131 |
|---|
| SMAD3 | | 1 | 25 | 89 | 92 | 0.079 | 0.071 | 0.094 | -0.054 | 0.013 |
|---|
| GFAP | | 1 | 25 | 89 | 92 | 0.144 | 0.048 | 0.000 | 0.076 | 0.087 |
|---|
| RAD51C | | 1 | 25 | 89 | 92 | 0.160 | 0.039 | 0.015 | 0.007 | 0.063 |
|---|
| ALB | | 3 | 3 | 61 | 61 | -0.085 | 0.115 | -0.022 | -0.113 | -0.027 |
|---|
| RAD51 | | 2 | 9 | 45 | 46 | 0.111 | 0.127 | 0.124 | 0.262 | 0.168 |
|---|
| IL6 | | 1 | 25 | 89 | 92 | -0.027 | -0.093 | -0.102 | 0.035 | -0.023 |
|---|
| IGFBP5 | | 3 | 3 | 61 | 61 | 0.011 | 0.158 | 0.087 | 0.185 | -0.000 |
|---|
| RAD50 | | 1 | 25 | 89 | 92 | 0.144 | 0.084 | 0.056 | -0.113 | 0.006 |
|---|
| ALDOA | | 1 | 25 | 89 | 92 | 0.022 | 0.218 | 0.120 | 0.109 | 0.039 |
|---|
| S100A1 | | 1 | 25 | 89 | 92 | 0.023 | 0.050 | 0.108 | -0.053 | 0.039 |
|---|
| CTAGE5 | | 1 | 25 | 89 | 92 | 0.076 | -0.066 | 0.037 | -0.031 | 0.120 |
|---|
| RAD51L1 | | 1 | 25 | 89 | 92 | 0.093 | 0.001 | -0.030 | undef | -0.148 |
|---|
| H2AFX | | 1 | 25 | 89 | 92 | 0.075 | 0.125 | 0.198 | 0.137 | 0.062 |
|---|
| UIMC1 | | 2 | 9 | 61 | 65 | 0.146 | 0.050 | -0.026 | -0.072 | -0.035 |
|---|
| YWHAZ | | 2 | 9 | 89 | 89 | -0.011 | 0.121 | 0.048 | undef | 0.108 |
|---|
| COPS6 | | 1 | 25 | 89 | 92 | 0.114 | 0.099 | -0.026 | 0.072 | 0.075 |
|---|
| HEXA | | 1 | 25 | 89 | 92 | -0.137 | -0.011 | -0.065 | 0.159 | -0.048 |
|---|
| SFN | | 1 | 25 | 89 | 92 | 0.043 | 0.107 | 0.083 | 0.201 | 0.056 |
|---|
| JARID2 | | 2 | 9 | 61 | 65 | 0.079 | 0.005 | 0.116 | 0.116 | 0.004 |
|---|
GO Enrichment output for subnetwork 121 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fructose metabolic process | GO:0006000 |  | 4.28E-11 | 1.046E-07 |
|---|
| positive regulation of locomotion | GO:0040017 | | 3.905E-10 | 4.769E-07 |
|---|
| regulation of chemotaxis | GO:0050920 | | 5.264E-10 | 4.287E-07 |
|---|
| regulation of behavior | GO:0050795 | | 9.17E-10 | 5.601E-07 |
|---|
| fructose 1.6-bisphosphate metabolic process | GO:0030388 | | 1.602E-09 | 7.827E-07 |
|---|
| positive regulation of response to external stimulus | GO:0032103 | | 3.419E-08 | 1.392E-05 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 2.119E-07 | 7.395E-05 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 2.23E-07 | 6.811E-05 |
|---|
| regulation of peptidyl-tyrosine phosphorylation | GO:0050730 | | 5.317E-07 | 1.443E-04 |
|---|
| positive regulation of DNA metabolic process | GO:0051054 | | 5.996E-07 | 1.465E-04 |
|---|
| polyol catabolic process | GO:0046174 | | 7.619E-07 | 1.692E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fructose metabolic process | GO:0006000 | | 5.112E-11 | 1.23E-07 |
|---|
| positive regulation of locomotion | GO:0040017 | | 3.402E-10 | 4.092E-07 |
|---|
| regulation of chemotaxis | GO:0050920 | | 4.661E-10 | 3.738E-07 |
|---|
| regulation of behavior | GO:0050795 | | 8.347E-10 | 5.021E-07 |
|---|
| fructose 1.6-bisphosphate metabolic process | GO:0030388 | | 1.811E-09 | 8.715E-07 |
|---|
| positive regulation of response to external stimulus | GO:0032103 | | 3.53E-08 | 1.415E-05 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 2.52E-07 | 8.661E-05 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 2.579E-07 | 7.756E-05 |
|---|
| regulation of peptidyl-tyrosine phosphorylation | GO:0050730 | | 5.298E-07 | 1.416E-04 |
|---|
| positive regulation of DNA metabolic process | GO:0051054 | | 6.953E-07 | 1.673E-04 |
|---|
| regulation of alternative nuclear mRNA splicing. via spliceosome | GO:0000381 | | 8.365E-07 | 1.83E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fructose metabolic process | GO:0006000 | | 1.052E-10 | 2.42E-07 |
|---|
| positive regulation of locomotion | GO:0040017 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of chemotaxis | GO:0050920 | | 6.988E-10 | 5.358E-07 |
|---|
| regulation of behavior | GO:0050795 | | 9.57E-10 | 5.503E-07 |
|---|
| fructose 1.6-bisphosphate metabolic process | GO:0030388 | | 2.985E-09 | 1.373E-06 |
|---|
| DNA recombination | GO:0006310 | | 1.966E-08 | 7.537E-06 |
|---|
| positive regulation of response to external stimulus | GO:0032103 | | 4.579E-08 | 1.505E-05 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 1.925E-07 | 5.535E-05 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 2.308E-07 | 5.898E-05 |
|---|
| positive regulation of DNA metabolic process | GO:0051054 | | 6.119E-07 | 1.407E-04 |
|---|
| regulation of peptidyl-tyrosine phosphorylation | GO:0050730 | | 7.389E-07 | 1.545E-04 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA recombination | GO:0006310 | | 2.963E-09 | 5.46E-06 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 3.99E-09 | 3.677E-06 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 1.944E-08 | 1.194E-05 |
|---|
| positive regulation of DNA metabolic process | GO:0051054 | | 6.264E-08 | 2.886E-05 |
|---|
| double-strand break repair | GO:0006302 | | 1.542E-07 | 5.684E-05 |
|---|
| positive regulation of locomotion | GO:0040017 | | 3.885E-07 | 1.193E-04 |
|---|
| regulation of behavior | GO:0050795 | | 5.42E-07 | 1.427E-04 |
|---|
| positive regulation of leukocyte chemotaxis | GO:0002690 | | 1.198E-06 | 2.76E-04 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.198E-06 | 2.453E-04 |
|---|
| regulation of protein modification process | GO:0031399 | | 2.184E-06 | 4.026E-04 |
|---|
| negative regulation of lipid metabolic process | GO:0045833 | | 4.164E-06 | 6.976E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| fructose metabolic process | GO:0006000 | | 1.052E-10 | 2.42E-07 |
|---|
| positive regulation of locomotion | GO:0040017 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of chemotaxis | GO:0050920 | | 6.988E-10 | 5.358E-07 |
|---|
| regulation of behavior | GO:0050795 | | 9.57E-10 | 5.503E-07 |
|---|
| fructose 1.6-bisphosphate metabolic process | GO:0030388 | | 2.985E-09 | 1.373E-06 |
|---|
| DNA recombination | GO:0006310 | | 1.966E-08 | 7.537E-06 |
|---|
| positive regulation of response to external stimulus | GO:0032103 | | 4.579E-08 | 1.505E-05 |
|---|
| double-strand break repair via homologous recombination | GO:0000724 | | 1.925E-07 | 5.535E-05 |
|---|
| regulation of DNA metabolic process | GO:0051052 | | 2.308E-07 | 5.898E-05 |
|---|
| positive regulation of DNA metabolic process | GO:0051054 | | 6.119E-07 | 1.407E-04 |
|---|
| regulation of peptidyl-tyrosine phosphorylation | GO:0050730 | | 7.389E-07 | 1.545E-04 |
|---|
