Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6918

score

Expression data for subnetwork 6918 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6918 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
EGR1		39	29	1	18	-0.184	0.259	0.130	0.018	0.122
SPC25		1	1195	780	817	0.296	-0.210	0.154	0.079	-0.108
GADD45G		43	25	141	134	0.030	-0.029	-0.207	0.201	-0.055
GABBR1		5	360	780	767	-0.107	0.164	0.081	0.074	0.131
EGF		12	140	638	620	-0.212	0.182	-0.276	-0.060	0.005
LDLR		5	360	780	767	-0.041	0.218	0.039	-0.028	0.064
PTTG1		1	1195	780	817	0.251	-0.139	0.036	0.001	0.128
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
RSF1		2	743	780	787	-0.032	0.063	0.103	0.218	0.021
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
POM121		7	256	780	763	-0.197	0.101	0.079	undef	0.017
ELF3		1	1195	780	817	0.178	-0.022	-0.052	0.048	-0.076
CRKL		6	301	780	764	-0.023	0.056	0.271	-0.025	-0.008
OTUD1		1	1195	780	817	0.041	-0.105	undef	undef	undef
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
PTEN		27	50	141	135	0.045	0.055	0.017	0.183	-0.041
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
COL6A1		5	360	780	767	-0.112	0.193	-0.013	undef	0.039
BRD7		23	66	457	437	-0.090	0.019	-0.188	undef	-0.086
AP2B1		6	301	780	764	-0.070	-0.106	0.070	0.252	0.094
BUB1		6	301	590	582	0.246	-0.172	0.013	-0.007	0.170
ESF1		1	1195	780	817	-0.064	0.070	0.098	-0.004	0.200
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
TP53BP2		11	148	692	668	0.245	-0.012	0.129	0.021	0.017
MYO5A		1	1195	780	817	0.071	-0.021	-0.066	-0.082	0.135
CKAP4		6	301	780	764	0.093	0.152	-0.167	0.315	-0.017
TRIM23		1	1195	780	817	-0.013	-0.004	0.053	-0.041	0.183
RPL9		1	1195	780	817	0.041	0.112	0.158	-0.284	-0.041
TAF1D		10	167	590	566	0.141	0.113	0.041	undef	0.059
AKT2		28	47	412	394	0.110	-0.118	-0.003	0.088	-0.092
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
FHL2		21	73	658	630	0.143	0.239	-0.033	0.107	0.294
COL4A3BP		1	1195	780	817	0.001	-0.002	0.035	0.005	-0.048
OSBPL10		2	743	780	787	-0.116	0.239	0.026	0.187	0.035
SMC2		4	440	83	112	0.202	-0.108	0.119	0.132	0.079
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
BCAR1		6	301	1	52	-0.012	0.229	undef	0.223	undef
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
CHAF1A		1	1195	780	817	-0.006	-0.147	0.022	-0.167	-0.057
SKIL		3	557	780	781	0.209	0.108	0.073	0.094	-0.020
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
SMAD2		4	440	590	585	-0.039	-0.199	0.076	-0.003	0.247
NSL1		2	743	780	787	0.221	-0.079	0.288	undef	0.174
IGFBP5		48	23	83	80	-0.076	0.110	0.074	0.278	0.181
FGF7		10	167	780	760	-0.094	0.237	0.070	0.038	0.083
UIMC1		6	301	179	205	-0.054	0.226	0.031	-0.005	0.189
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
USP11		7	256	478	462	-0.144	0.106	0.121	0.218	-0.044
TNFRSF10D		1	1195	780	817	0.081	0.020	0.000	-0.141	undef
CBX5		5	360	1	56	0.155	0.016	0.148	0.030	-0.009
TGS1		5	360	780	767	-0.060	-0.044	0.232	undef	0.269
DNAJA2		3	557	780	781	0.054	0.063	-0.152	-0.019	0.081
PKIA		11	148	780	759	-0.120	0.085	0.249	0.164	0.044
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092

GO Enrichment output for subnetwork 6918 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
platelet-derived growth factor receptor signaling pathway	GO:0048008		6.083E-11	1.486E-07
phospholipid dephosphorylation	GO:0046839		1.518E-09	1.855E-06
negative regulation of protein kinase B signaling cascade	GO:0051898		4.54E-09	3.697E-06
negative regulation of focal adhesion formation	GO:0051895		1.056E-08	6.449E-06
regulation of focal adhesion formation	GO:0051893		2.105E-08	1.028E-05
regulation of protein kinase B signaling cascade	GO:0051896		6.273E-08	2.554E-05
negative regulation of cell-matrix adhesion	GO:0001953		9.826E-08	3.429E-05
endothelial cell migration	GO:0043542		6.948E-07	2.122E-04
cardiac muscle tissue development	GO:0048738		6.948E-07	1.886E-04
inositol metabolic process	GO:0006020		1.124E-06	2.746E-04
negative regulation of cell migration	GO:0030336		1.492E-06	3.315E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
platelet-derived growth factor receptor signaling pathway	GO:0048008		1.122E-10	2.7E-07
phospholipid dephosphorylation	GO:0046839		2.293E-09	2.759E-06
negative regulation of protein kinase B signaling cascade	GO:0051898		6.855E-09	5.498E-06
negative regulation of focal adhesion formation	GO:0051895		1.594E-08	9.586E-06
regulation of focal adhesion formation	GO:0051893		3.176E-08	1.528E-05
regulation of protein kinase B signaling cascade	GO:0051896		9.458E-08	3.793E-05
negative regulation of cell-matrix adhesion	GO:0001953		1.481E-07	5.09E-05
inositol metabolic process	GO:0006020		1.045E-06	3.143E-04
cardiac muscle tissue development	GO:0048738		1.045E-06	2.793E-04
endothelial cell migration	GO:0043542		1.045E-06	2.514E-04
negative regulation of cell migration	GO:0030336		2.46E-06	5.381E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
platelet-derived growth factor receptor signaling pathway	GO:0048008		2.233E-07	5.135E-04
negative regulation of protein kinase B signaling cascade	GO:0051898		1.912E-06	2.199E-03
negative regulation of focal adhesion formation	GO:0051895		3.808E-06	2.92E-03
regulation of focal adhesion formation	GO:0051893		6.636E-06	3.816E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.057E-05	4.863E-03
regulation of protein kinase B signaling cascade	GO:0051896		1.057E-05	4.053E-03
angiogenesis	GO:0001525		1.943E-05	6.384E-03
negative regulation of cell-matrix adhesion	GO:0001953		2.246E-05	6.458E-03
mammary gland development	GO:0030879		3.045E-05	7.781E-03
regulation of intracellular protein transport	GO:0033157		4.977E-05	0.01144647
inositol metabolic process	GO:0006020		6.699E-05	0.01400706

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
platelet-derived growth factor receptor signaling pathway	GO:0048008		1.792E-07	3.302E-04
regulation of cell migration	GO:0030334		2.609E-07	2.404E-04
regulation of locomotion	GO:0040012		5.475E-07	3.363E-04
regulation of cell motion	GO:0051270		5.475E-07	2.523E-04
heart development	GO:0007507		1.063E-06	3.917E-04
positive regulation of cell migration	GO:0030335		2.756E-06	8.465E-04
positive regulation of cell motion	GO:0051272		4.149E-06	1.092E-03
mammary gland development	GO:0030879		8.047E-06	1.854E-03
gland development	GO:0048732		1.311E-05	2.684E-03
anterior/posterior pattern formation	GO:0009952		1.449E-05	2.671E-03
regulation of intracellular protein transport	GO:0033157		1.669E-05	2.797E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
platelet-derived growth factor receptor signaling pathway	GO:0048008		2.233E-07	5.135E-04
negative regulation of protein kinase B signaling cascade	GO:0051898		1.912E-06	2.199E-03
negative regulation of focal adhesion formation	GO:0051895		3.808E-06	2.92E-03
regulation of focal adhesion formation	GO:0051893		6.636E-06	3.816E-03
phosphoinositide 3-kinase cascade	GO:0014065		1.057E-05	4.863E-03
regulation of protein kinase B signaling cascade	GO:0051896		1.057E-05	4.053E-03
angiogenesis	GO:0001525		1.943E-05	6.384E-03
negative regulation of cell-matrix adhesion	GO:0001953		2.246E-05	6.458E-03
mammary gland development	GO:0030879		3.045E-05	7.781E-03
regulation of intracellular protein transport	GO:0033157		4.977E-05	0.01144647
inositol metabolic process	GO:0006020		6.699E-05	0.01400706