Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6635

score

Expression data for subnetwork 6635 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6635 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
CDKN2B		7	256	236	237	0.066	0.050	-0.028	0.039	0.153
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
NCOR2		32	40	318	290	-0.096	0.211	-0.163	0.158	0.114
CASP3		11	148	141	143	0.234	-0.032	-0.142	-0.097	-0.084
PARD6A		2	743	366	395	0.140	-0.084	0.008	0.161	0.084
PPP1R2		1	1195	552	606	0.163	0.000	0.035	-0.038	0.037
EXOSC3		3	557	552	558	0.107	0.121	undef	-0.074	undef
NF1		9	196	552	541	0.110	-0.052	-0.032	0.090	-0.094
HTRA1		7	256	83	102	-0.046	0.184	0.051	0.132	0.224
RIF1		2	743	552	568	0.057	-0.060	-0.035	undef	-0.092
ATF7		28	47	179	175	0.085	0.115	-0.088	0.172	-0.092
MDM4		9	196	141	147	-0.016	0.004	0.164	0.107	0.105
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CHEK1		18	86	141	136	0.189	-0.134	0.119	-0.088	-0.054
CDKN1A		110	5	1	5	0.064	0.254	0.030	undef	0.082
GSTP1		14	117	1	34	0.222	-0.166	0.201	0.126	-0.136
SBDS		1	1195	552	606	0.204	-0.063	undef	0.075	undef
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
RPP30		1	1195	552	606	0.217	-0.091	0.171	-0.053	-0.065
CDKN2C		16	104	236	227	0.216	-0.106	0.202	-0.024	-0.081
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
GLI3		21	73	478	456	-0.138	0.080	-0.007	0.282	-0.018
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
LMNB1		2	743	83	123	-0.158	-0.177	0.010	0.006	0.156
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
PFKL		7	256	83	102	0.056	0.106	-0.173	0.160	-0.158
LLGL2		1	1195	552	606	-0.000	0.209	-0.030	0.178	-0.062
PAK2		26	52	179	177	0.014	0.161	0.081	-0.044	0.062
SCHIP1		10	167	478	459	0.130	0.136	0.105	-0.022	0.198
BRD7		23	66	457	437	-0.090	0.019	-0.188	undef	-0.086
TWIST1		50	20	1	14	0.044	0.194	0.061	undef	0.219
PPP2R2B		39	29	179	173	0.124	-0.019	0.029	0.116	-0.073
CASP1		6	301	552	544	0.204	-0.166	-0.046	undef	-0.034
CDK6		16	104	318	314	-0.229	0.107	-0.028	-0.118	0.104
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
CETN3		1	1195	552	606	0.199	0.089	0.108	-0.026	0.155
TBL1XR1		3	557	552	558	0.084	-0.064	undef	undef	undef
COL1A1		3	557	552	558	-0.156	0.244	-0.021	-0.081	0.086
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
JMJD1C		7	256	552	542	-0.195	0.241	0.074	undef	0.129
CDK7		7	256	318	328	0.105	0.184	0.017	0.078	-0.097
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
MAP1B		69	12	1	9	-0.123	0.263	-0.107	0.304	0.100
IKBKE		10	167	552	539	0.227	-0.041	-0.095	-0.197	0.079
MAP2		3	557	552	558	0.044	0.045	0.014	undef	-0.057
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
GRIN2D		13	124	552	522	0.058	0.155	0.000	undef	undef
KLF5		76	9	1	7	0.077	0.117	-0.007	-0.110	-0.006
COL1A2		7	256	552	542	-0.110	0.207	0.046	0.235	0.097
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
HSPB1		22	69	1	25	0.053	0.169	0.017	0.179	0.161
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105
MELK		1	1195	552	606	0.253	-0.187	0.031	0.000	0.060
FOXA1		27	50	179	176	-0.072	0.071	-0.015	0.214	0.005
PFKP		6	301	83	105	0.195	-0.076	-0.040	undef	0.094
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298

GO Enrichment output for subnetwork 6635 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.547E-15	1.111E-11
interphase of mitotic cell cycle	GO:0051329		2.321E-12	2.834E-09
negative regulation of phosphorylation	GO:0042326		1.634E-09	1.331E-06
G2/M transition of mitotic cell cycle	GO:0000086		2.142E-09	1.308E-06
negative regulation of phosphorus metabolic process	GO:0010563		2.773E-09	1.355E-06
androgen receptor signaling pathway	GO:0030521		2.677E-08	1.09E-05
regulation of lipid kinase activity	GO:0043550		3.914E-08	1.366E-05
phosphoinositide 3-kinase cascade	GO:0014065		3.914E-08	1.195E-05
negative regulation of protein kinase activity	GO:0006469		5.187E-08	1.408E-05
negative regulation of kinase activity	GO:0033673		5.739E-08	1.402E-05
negative regulation of transferase activity	GO:0051348		8.474E-08	1.882E-05

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.004E-14	2.415E-11
interphase of mitotic cell cycle	GO:0051329		3.574E-12	4.3E-09
interphase	GO:0051325		5.06E-12	4.058E-09
negative regulation of phosphorylation	GO:0042326		2.544E-09	1.53E-06
G2/M transition of mitotic cell cycle	GO:0000086		3.333E-09	1.604E-06
negative regulation of phosphorus metabolic process	GO:0010563		4.314E-09	1.73E-06
regulation of lipid kinase activity	GO:0043550		2.652E-08	9.115E-06
androgen receptor signaling pathway	GO:0030521		3.493E-08	1.051E-05
phosphoinositide 3-kinase cascade	GO:0014065		5.282E-08	1.412E-05
negative regulation of protein kinase activity	GO:0006469		6.967E-08	1.676E-05
negative regulation of kinase activity	GO:0033673		7.732E-08	1.691E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.105E-13	9.441E-10
interphase of mitotic cell cycle	GO:0051329		9.563E-11	1.1E-07
interphase	GO:0051325		1.207E-10	9.253E-08
negative regulation of phosphorylation	GO:0042326		3.776E-09	2.171E-06
negative regulation of phosphorus metabolic process	GO:0010563		6.56E-09	3.017E-06
regulation of lipid kinase activity	GO:0043550		4.241E-08	1.626E-05
negative regulation of protein kinase activity	GO:0006469		4.759E-08	1.564E-05
negative regulation of kinase activity	GO:0033673		5.385E-08	1.548E-05
negative regulation of transferase activity	GO:0051348		7.7E-08	1.968E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		8.443E-08	1.942E-05
phosphoinositide 3-kinase cascade	GO:0014065		8.443E-08	1.765E-05

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		4.081E-10	7.521E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.276E-10	8.547E-07
androgen receptor signaling pathway	GO:0030521		2.285E-07	1.404E-04
gland development	GO:0048732		3.544E-07	1.633E-04
G1 phase	GO:0051318		5.192E-07	1.914E-04
regulation of epithelial cell proliferation	GO:0050678		6.247E-07	1.919E-04
G2/M transition of mitotic cell cycle	GO:0000086		7.467E-07	1.966E-04
prostate gland development	GO:0030850		1.949E-06	4.489E-04
negative regulation of protein kinase activity	GO:0006469		2.214E-06	4.534E-04
negative regulation of kinase activity	GO:0033673		2.538E-06	4.678E-04
urogenital system development	GO:0001655		2.538E-06	4.253E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.105E-13	9.441E-10
interphase of mitotic cell cycle	GO:0051329		9.563E-11	1.1E-07
interphase	GO:0051325		1.207E-10	9.253E-08
negative regulation of phosphorylation	GO:0042326		3.776E-09	2.171E-06
negative regulation of phosphorus metabolic process	GO:0010563		6.56E-09	3.017E-06
regulation of lipid kinase activity	GO:0043550		4.241E-08	1.626E-05
negative regulation of protein kinase activity	GO:0006469		4.759E-08	1.564E-05
negative regulation of kinase activity	GO:0033673		5.385E-08	1.548E-05
negative regulation of transferase activity	GO:0051348		7.7E-08	1.968E-05
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		8.443E-08	1.942E-05
phosphoinositide 3-kinase cascade	GO:0014065		8.443E-08	1.765E-05