Study Desmedt-ER-neg
Study informations
165 subnetworks in total page | file
2310 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6545
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 | Fisher Score |
|---|
| IPC | 0.7547 | 3.465e-03 | 5.620e-04 | 7.686e-01 | 1.497e-06 |
|---|
| Loi | 0.2306 | 7.986e-02 | 1.125e-02 | 4.272e-01 | 3.839e-04 |
|---|
| Schmidt | 0.6727 | 0.000e+00 | 0.000e+00 | 4.563e-02 | 0.000e+00 |
|---|
| VanDeVijver | 0.7908 | 0.000e+00 | 0.000e+00 | 3.469e-03 | 0.000e+00 |
|---|
| Wang | 0.2615 | 2.682e-03 | 4.386e-02 | 3.965e-01 | 4.664e-05 |
|---|
Expression data for subnetwork 6545 in each dataset
IPC |
Loi |
Schmidt |
VanDeVijver |
Wang |
Subnetwork structure for each dataset
- IPC
Score for each gene in subnetwork 6545 in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
IPC | Loi | Schmidt | VanDeVijver | Wang |
|---|
| EGR1 |   | 39 | 29 | 1 | 18 | -0.184 | 0.259 | 0.130 | 0.018 | 0.122 |
|---|
| PARP1 | | 29 | 45 | 83 | 84 | -0.036 | -0.162 | -0.089 | 0.238 | 0.012 |
|---|
| ARHGEF7 | | 25 | 59 | 83 | 92 | -0.074 | -0.061 | 0.208 | 0.028 | 0.015 |
|---|
| RIPK3 | | 19 | 85 | 179 | 186 | -0.014 | 0.040 | undef | 0.173 | undef |
|---|
| PIK3R1 | | 127 | 2 | 1 | 2 | -0.237 | 0.381 | 0.065 | undef | -0.002 |
|---|
| TP53 | | 85 | 7 | 1 | 6 | -0.167 | 0.148 | -0.027 | 0.252 | 0.147 |
|---|
| GNG4 | | 5 | 360 | 1077 | 1057 | 0.095 | -0.139 | -0.169 | 0.129 | 0.106 |
|---|
| ERBB2 | | 141 | 1 | 1 | 1 | -0.103 | 0.092 | -0.090 | 0.267 | 0.046 |
|---|
| FLNA | | 50 | 20 | 1 | 14 | 0.081 | 0.107 | 0.148 | 0.268 | 0.126 |
|---|
| CDKN1A | | 110 | 5 | 1 | 5 | 0.064 | 0.254 | 0.030 | undef | 0.082 |
|---|
| RPL10A | | 2 | 743 | 1785 | 1775 | 0.176 | 0.061 | 0.219 | -0.063 | -0.024 |
|---|
| IRS4 | | 32 | 40 | 236 | 224 | 0.115 | -0.111 | -0.088 | 0.096 | 0.142 |
|---|
| GNB2 | | 11 | 148 | 525 | 505 | -0.091 | 0.082 | -0.062 | 0.208 | -0.062 |
|---|
| EGFR | | 117 | 3 | 1 | 3 | -0.195 | 0.240 | -0.205 | -0.187 | 0.065 |
|---|
| GRM5 | | 15 | 111 | 179 | 191 | 0.094 | -0.019 | 0.000 | 0.093 | -0.093 |
|---|
| MUC1 | | 13 | 124 | 1547 | 1490 | 0.063 | 0.214 | -0.190 | undef | -0.132 |
|---|
| INSR | | 96 | 6 | 236 | 221 | 0.063 | 0.173 | 0.135 | -0.014 | -0.072 |
|---|
| CTNNB1 | | 43 | 25 | 83 | 81 | -0.113 | 0.187 | 0.159 | -0.090 | 0.239 |
|---|
| CDH1 | | 37 | 32 | 296 | 278 | -0.227 | 0.187 | -0.236 | 0.137 | -0.024 |
|---|
| HTT | | 14 | 117 | 141 | 140 | -0.016 | -0.015 | 0.075 | 0.092 | -0.093 |
|---|
| GNAZ | | 15 | 111 | 478 | 457 | 0.134 | -0.116 | 0.308 | 0.267 | 0.011 |
|---|
| PAK2 | | 26 | 52 | 179 | 177 | 0.014 | 0.161 | 0.081 | -0.044 | 0.062 |
|---|
| EEF1A2 | | 8 | 222 | 457 | 450 | 0.032 | 0.220 | -0.119 | 0.018 | 0.102 |
|---|
| CCNA1 | | 33 | 37 | 412 | 393 | 0.174 | 0.092 | 0.078 | 0.055 | -0.098 |
|---|
| PTPN11 | | 20 | 81 | 83 | 94 | -0.152 | 0.014 | 0.066 | 0.304 | 0.089 |
|---|
| KRT2 | | 2 | 743 | 457 | 481 | undef | -0.004 | 0.229 | -0.004 | -0.094 |
|---|
| PPP2R2B | | 39 | 29 | 179 | 173 | 0.124 | -0.019 | 0.029 | 0.116 | -0.073 |
|---|
| CDK6 | | 16 | 104 | 318 | 314 | -0.229 | 0.107 | -0.028 | -0.118 | 0.104 |
|---|
| CKAP4 | | 6 | 301 | 780 | 764 | 0.093 | 0.152 | -0.167 | 0.315 | -0.017 |
|---|
GO Enrichment output for subnetwork 6545 in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to hormone stimulus | GO:0032870 |  | 3.162E-11 | 7.725E-08 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.652E-10 | 9.346E-07 |
|---|
| hormone-mediated signaling | GO:0009755 | | 8.875E-10 | 7.228E-07 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.06E-09 | 6.474E-07 |
|---|
| organ growth | GO:0035265 | | 1.06E-09 | 5.179E-07 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 1.06E-09 | 4.316E-07 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 1.356E-09 | 4.732E-07 |
|---|
| regulation of growth hormone secretion | GO:0060123 | | 2.116E-09 | 6.462E-07 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 2.789E-09 | 7.57E-07 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 3.802E-09 | 9.288E-07 |
|---|
| regulation of intracellular transport | GO:0032386 | | 5.144E-09 | 1.142E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 3.845E-11 | 9.252E-08 |
|---|
| hormone-mediated signaling | GO:0009755 | | 9.588E-10 | 1.153E-06 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 1.116E-09 | 8.953E-07 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.374E-09 | 8.264E-07 |
|---|
| organ growth | GO:0035265 | | 1.374E-09 | 6.612E-07 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 1.374E-09 | 5.51E-07 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 1.977E-09 | 6.796E-07 |
|---|
| regulation of growth hormone secretion | GO:0060123 | | 2.743E-09 | 8.248E-07 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 4.291E-09 | 1.147E-06 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 4.927E-09 | 1.185E-06 |
|---|
| regulation of intracellular transport | GO:0032386 | | 7.492E-09 | 1.639E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 4.528E-11 | 1.041E-07 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 3.472E-10 | 3.992E-07 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.813E-10 | 5.99E-07 |
|---|
| hormone-mediated signaling | GO:0009755 | | 9.354E-10 | 5.379E-07 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.039E-09 | 4.78E-07 |
|---|
| organ growth | GO:0035265 | | 2.42E-09 | 9.275E-07 |
|---|
| regulation of growth hormone secretion | GO:0060123 | | 2.42E-09 | 7.95E-07 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.485E-09 | 7.146E-07 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 4.828E-09 | 1.234E-06 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 5.599E-09 | 1.288E-06 |
|---|
| regulation of intracellular transport | GO:0032386 | | 6.522E-09 | 1.364E-06 |
|---|
VanDeVijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein amino acid autophosphorylation | GO:0046777 | | 1.924E-08 | 3.546E-05 |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 2.586E-07 | 2.383E-04 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 3.575E-07 | 2.196E-04 |
|---|
| hormone-mediated signaling | GO:0009755 | | 5.524E-07 | 2.545E-04 |
|---|
| positive regulation of transcription factor import into nucleus | GO:0042993 | | 5.642E-07 | 2.08E-04 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 9.493E-07 | 2.916E-04 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 1.312E-06 | 3.453E-04 |
|---|
| regulation of MAP kinase activity | GO:0043405 | | 1.617E-06 | 3.726E-04 |
|---|
| regulation of epithelial cell proliferation | GO:0050678 | | 1.768E-06 | 3.619E-04 |
|---|
| regulation of intracellular transport | GO:0032386 | | 2.332E-06 | 4.297E-04 |
|---|
| positive regulation of protein import into nucleus | GO:0042307 | | 2.355E-06 | 3.946E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to hormone stimulus | GO:0032870 | | 4.528E-11 | 1.041E-07 |
|---|
| negative regulation of peptide secretion | GO:0002792 | | 3.472E-10 | 3.992E-07 |
|---|
| regulation of intracellular protein transport | GO:0033157 | | 7.813E-10 | 5.99E-07 |
|---|
| hormone-mediated signaling | GO:0009755 | | 9.354E-10 | 5.379E-07 |
|---|
| regulation of protein export from nucleus | GO:0046825 | | 1.039E-09 | 4.78E-07 |
|---|
| organ growth | GO:0035265 | | 2.42E-09 | 9.275E-07 |
|---|
| regulation of growth hormone secretion | GO:0060123 | | 2.42E-09 | 7.95E-07 |
|---|
| regulation of nucleocytoplasmic transport | GO:0046822 | | 2.485E-09 | 7.146E-07 |
|---|
| nerve growth factor receptor signaling pathway | GO:0048011 | | 4.828E-09 | 1.234E-06 |
|---|
| positive regulation of MAP kinase activity | GO:0043406 | | 5.599E-09 | 1.288E-06 |
|---|
| regulation of intracellular transport | GO:0032386 | | 6.522E-09 | 1.364E-06 |
|---|
