Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6413

score

Expression data for subnetwork 6413 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6413 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
EP300		113	4	1	4	-0.149	0.087	0.102	0.052	0.025
SPOCK1		1	1195	2087	2092	0.093	0.253	0.145	0.207	0.241
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
BCAT1		4	440	1735	1699	0.273	-0.134	0.161	-0.078	0.122
RGS2		3	557	1131	1126	0.118	0.061	0.084	0.050	0.178
YWHAE		4	440	179	209	-0.018	0.112	0.279	-0.094	0.014
PRKCA		63	15	1	10	-0.016	-0.088	0.174	0.095	0.005
GSTP1		14	117	1	34	0.222	-0.166	0.201	0.126	-0.136
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
KIAA1432		3	557	1681	1657	-0.132	-0.054	undef	0.108	undef
TOP2A		20	81	1	28	0.193	-0.168	0.054	-0.064	0.071
JUN		26	52	179	177	0.200	0.051	0.220	undef	0.200
UNC119		10	167	83	98	-0.009	-0.324	-0.099	0.094	0.071
PCNA		15	111	1	32	0.243	-0.158	0.027	-0.099	0.003
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
CDC42		26	52	179	177	0.047	0.242	-0.027	0.040	-0.042
CDH1		37	32	296	278	-0.227	0.187	-0.236	0.137	-0.024
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
PAK2		26	52	179	177	0.014	0.161	0.081	-0.044	0.062
MMP2		3	557	1190	1182	-0.105	0.186	-0.024	undef	0.162
FOSB		5	360	1534	1501	-0.033	0.046	0.129	-0.104	0.095
MMP14		2	743	1190	1189	-0.114	0.056	0.011	0.105	0.148
BRD7		23	66	457	437	-0.090	0.019	-0.188	undef	-0.086
PPP2R2B		39	29	179	173	0.124	-0.019	0.029	0.116	-0.073
NR2C1		8	222	727	703	0.121	0.039	0.119	-0.197	-0.026
MYB		28	47	366	344	-0.028	0.075	0.002	0.065	-0.012
CKS2		9	196	928	903	0.214	-0.220	0.089	-0.003	-0.056
FAP		1	1195	2087	2092	0.110	0.065	-0.011	0.122	0.181
PDK1		10	167	1	40	0.183	-0.138	-0.041	-0.265	-0.126
CTNNAL1		4	440	682	678	-0.014	0.073	-0.008	-0.131	0.004
RIPK3		19	85	179	186	-0.014	0.040	undef	0.173	undef
PIK3R1		127	2	1	2	-0.237	0.381	0.065	undef	-0.002
CDC42BPA		6	301	1268	1236	-0.102	0.098	0.059	0.368	0.260
FLNA		50	20	1	14	0.081	0.107	0.148	0.268	0.126
VEGFA		68	14	83	78	0.090	0.200	0.030	0.095	0.148
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
POLR3A		8	222	296	287	-0.010	-0.032	undef	0.091	undef
EGFR		117	3	1	3	-0.195	0.240	-0.205	-0.187	0.065
FGFR1		26	52	638	615	-0.036	0.200	0.087	undef	-0.015
TUBA1B		6	301	590	582	0.116	0.094	0.249	0.101	0.128
INSR		96	6	236	221	0.063	0.173	0.135	-0.014	-0.072
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
AGPAT2		3	557	412	430	0.167	-0.015	0.123	0.042	-0.076
AIRE		1	1195	2087	2092	0.054	-0.163	-0.033	0.097	-0.196
PKN3		18	86	179	187	-0.181	0.009	undef	0.239	undef
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
CCNA1		33	37	412	393	0.174	0.092	0.078	0.055	-0.098
ACAN		5	360	412	416	0.156	0.132	-0.024	-0.171	-0.083
HTRA4		8	222	83	101	0.102	undef	undef	undef	undef
H2AFX		7	256	179	201	0.111	-0.072	0.121	0.165	-0.010
AR		46	24	141	133	-0.163	0.081	-0.035	0.178	-0.030
GSK3B		79	8	179	169	-0.130	0.292	-0.129	0.291	0.057
PLD1		17	95	1	29	0.132	0.033	-0.158	-0.062	0.123
TH		2	743	1988	1970	0.182	-0.018	0.068	undef	0.039
IMMP1L		2	743	1830	1815	0.243	-0.028	undef	undef	undef
HSPB1		22	69	1	25	0.053	0.169	0.017	0.179	0.161
TGFB1I1		49	22	1	16	-0.105	0.229	0.143	0.195	0.298

GO Enrichment output for subnetwork 6413 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		3.744E-09	9.147E-06
establishment of nucleus localization	GO:0040023		1.736E-08	2.121E-05
induction of positive chemotaxis	GO:0050930		3.116E-08	2.537E-05
negative regulation of phosphorus metabolic process	GO:0010563		6.037E-08	3.687E-05
Wnt receptor signaling pathway through beta-catenin	GO:0060070		8.109E-08	3.962E-05
nucleus localization	GO:0051647		8.109E-08	3.302E-05
negative regulation of protein modification process	GO:0031400		8.962E-08	3.128E-05
regulation of positive chemotaxis	GO:0050926		1.213E-07	3.703E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		2.437E-07	6.614E-05
regulation of intracellular protein transport	GO:0033157		7.413E-07	1.811E-04
response to hypoxia	GO:0001666		9.663E-07	2.146E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		5.415E-09	1.303E-05
establishment of nucleus localization	GO:0040023		2.51E-08	3.019E-05
induction of positive chemotaxis	GO:0050930		4.502E-08	3.611E-05
Wnt receptor signaling pathway through beta-catenin	GO:0060070		7.477E-08	4.498E-05
negative regulation of phosphorus metabolic process	GO:0010563		9.508E-08	4.575E-05
nucleus localization	GO:0051647		1.171E-07	4.696E-05
negative regulation of protein modification process	GO:0031400		1.41E-07	4.848E-05
regulation of positive chemotaxis	GO:0050926		1.751E-07	5.265E-05
negative regulation of protein amino acid phosphorylation	GO:0001933		3.516E-07	9.399E-05
regulation of intracellular protein transport	GO:0033157		1.162E-06	2.795E-04
response to hypoxia	GO:0001666		1.638E-06	3.583E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		6.355E-09	1.462E-05
establishment of nucleus localization	GO:0040023		4.407E-08	5.068E-05
induction of positive chemotaxis	GO:0050930		8.772E-08	6.726E-05
nucleus localization	GO:0051647		1.572E-07	9.037E-05
negative regulation of phosphorus metabolic process	GO:0010563		3.595E-07	1.654E-04
regulation of positive chemotaxis	GO:0050926		4.078E-07	1.563E-04
negative regulation of protein modification process	GO:0031400		4.43E-07	1.455E-04
negative regulation of protein amino acid phosphorylation	GO:0001933		8.753E-07	2.517E-04
regulation of intracellular protein transport	GO:0033157		2.093E-06	5.35E-04
positive regulation of pseudopodium assembly	GO:0031274		2.148E-06	4.94E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		2.86E-06	5.98E-04

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of intracellular protein transport	GO:0033157		2.844E-07	5.242E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		3.476E-07	3.203E-04
regulation of nucleocytoplasmic transport	GO:0046822		4.284E-07	2.632E-04
protein amino acid autophosphorylation	GO:0046777		5.192E-07	2.392E-04
regulation of intracellular transport	GO:0032386		8.86E-07	3.266E-04
actin cytoskeleton reorganization	GO:0031532		1.949E-06	5.985E-04
nucleus localization	GO:0051647		1.949E-06	5.13E-04
positive regulation of transcription factor import into nucleus	GO:0042993		3.881E-06	8.941E-04
phosphoinositide-mediated signaling	GO:0048015		5.992E-06	1.227E-03
regulation of protein transport	GO:0051223		1.359E-05	2.505E-03
positive regulation of protein import into nucleus	GO:0042307		1.61E-05	2.697E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nuclear migration	GO:0007097		6.355E-09	1.462E-05
establishment of nucleus localization	GO:0040023		4.407E-08	5.068E-05
induction of positive chemotaxis	GO:0050930		8.772E-08	6.726E-05
nucleus localization	GO:0051647		1.572E-07	9.037E-05
negative regulation of phosphorus metabolic process	GO:0010563		3.595E-07	1.654E-04
regulation of positive chemotaxis	GO:0050926		4.078E-07	1.563E-04
negative regulation of protein modification process	GO:0031400		4.43E-07	1.455E-04
negative regulation of protein amino acid phosphorylation	GO:0001933		8.753E-07	2.517E-04
regulation of intracellular protein transport	GO:0033157		2.093E-06	5.35E-04
positive regulation of pseudopodium assembly	GO:0031274		2.148E-06	4.94E-04
positive regulation of nucleocytoplasmic transport	GO:0046824		2.86E-06	5.98E-04