Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6267

score

Expression data for subnetwork 6267 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6267 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
CASP3		11	148	141	143	0.234	-0.032	-0.142	-0.097	-0.084
FBXW11		3	557	658	654	0.154	0.225	0.262	undef	0.169
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
ACTG1		2	743	983	988	-0.102	0.061	0.012	0.161	0.235
NQO1		21	73	366	354	-0.115	0.069	-0.189	0.321	0.118
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
RPL30		1	1195	1903	1915	0.195	-0.138	0.144	-0.107	-0.032
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
MORF4L2		1	1195	1903	1915	0.063	0.214	0.018	0.017	0.157
FOSL2		3	557	366	389	0.100	0.080	-0.119	-0.154	0.080
GNB2		11	148	525	505	-0.091	0.082	-0.062	0.208	-0.062
GNAZ		15	111	478	457	0.134	-0.116	0.308	0.267	0.011
FOSB		5	360	1534	1501	-0.033	0.046	0.129	-0.104	0.095
NSFL1C		2	743	1576	1561	0.005	0.016	-0.204	0.137	-0.021
KIT		39	29	1	18	-0.130	-0.091	0.235	-0.046	-0.059
CFL1		2	743	1688	1673	-0.027	0.087	0.010	0.303	0.008
RPL35		8	222	1323	1280	0.108	-0.012	0.370	-0.145	-0.220
POLR2L		5	360	727	722	0.037	-0.012	0.224	0.054	0.015
TPM3		2	743	1903	1878	0.135	0.036	undef	undef	undef
GABPA		23	66	696	665	0.033	-0.183	0.066	0.141	-0.161
TFPI		1	1195	1903	1915	-0.129	-0.004	0.087	0.044	0.157
VSNL1		3	557	1437	1418	-0.026	0.080	0.220	-0.099	-0.041
ATXN1		17	95	1	29	0.026	0.192	0.175	0.125	0.163
MMP1		11	148	366	360	0.192	0.014	0.036	0.044	0.260
CD36		2	743	83	123	0.146	0.017	0.129	0.061	0.124
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
RPS9		1	1195	1903	1915	0.044	-0.059	0.209	-0.187	-0.119
YWHAG		24	62	296	279	0.067	0.024	undef	0.266	undef
BRCA2		41	28	236	222	0.206	-0.124	-0.066	0.233	-0.116
TMOD2		1	1195	1903	1915	0.061	-0.081	0.055	-0.061	undef
RTDR1		5	360	1364	1328	0.135	0.098	0.222	0.125	undef
RPL22		3	557	1576	1548	-0.266	0.105	0.059	-0.143	0.112
RPS3		2	743	1903	1878	0.038	0.007	0.236	-0.194	0.006
FOSL1		11	148	366	360	-0.040	0.164	0.010	0.128	0.005
HIVEP1		6	301	764	758	-0.199	0.069	0.000	0.193	-0.042
SH2D3A		3	557	1510	1486	0.197	0.141	-0.106	-0.012	0.121
GRB14		24	62	179	181	0.113	-0.129	0.143	-0.098	0.138
KIF23		4	440	957	942	0.168	-0.063	0.162	undef	0.033
RACGAP1		4	440	1222	1205	0.283	-0.164	0.073	0.055	0.188
THBS1		5	360	1141	1109	0.078	0.044	0.185	0.200	0.267
GNB5		9	196	1131	1100	-0.059	0.026	0.064	0.284	0.103
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
GHR		35	34	83	83	-0.112	0.174	0.090	0.176	0.201
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
GPATCH8		8	222	614	599	-0.143	0.014	0.019	-0.070	0.061
BAX		1	1195	1903	1915	-0.006	-0.068	0.107	-0.255	-0.110
CD9		13	124	525	503	0.036	-0.115	-0.109	0.281	-0.147
WT1		33	37	1	21	0.254	-0.039	0.036	undef	0.172
BNIP3		11	148	236	232	0.193	0.071	0.102	0.119	0.285
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
CASP1		6	301	552	544	0.204	-0.166	-0.046	undef	-0.034
TNFAIP6		3	557	1735	1718	0.102	0.234	0.077	-0.002	-0.073
THBS2		3	557	1903	1868	0.094	0.221	0.060	0.241	0.154
RIPK3		19	85	179	186	-0.014	0.040	undef	0.173	undef
SKP2		29	45	1	23	0.092	-0.043	0.237	undef	-0.009
USP8		1	1195	1903	1915	-0.137	0.046	0.083	0.015	0.139
GNG4		5	360	1077	1057	0.095	-0.139	-0.169	0.129	0.106
SUPT5H		6	301	1323	1281	-0.085	0.007	-0.298	0.002	-0.068
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
FANCA		9	196	1	44	0.120	-0.188	0.106	-0.127	-0.053
IRS4		32	40	236	224	0.115	-0.111	-0.088	0.096	0.142
POLR2A		6	301	1547	1510	-0.107	0.247	0.091	0.040	0.141
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
IRS1		9	196	842	805	-0.219	0.065	0.165	0.102	0.064
RAD51		13	124	727	699	0.146	-0.098	0.135	-0.070	0.061
GRB7		58	18	1	12	0.021	0.115	-0.072	0.229	0.129
RAI14		2	743	1903	1878	0.063	0.188	0.114	undef	0.225
POLR2E		2	743	1396	1391	0.127	0.039	0.166	0.084	-0.018
ITGB4		35	34	1	20	0.021	0.313	-0.134	0.080	-0.114
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
PKIA		11	148	780	759	-0.120	0.085	0.249	0.164	0.044

GO Enrichment output for subnetwork 6267 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		8.413E-16	2.055E-12
actomyosin structure organization	GO:0031032		2.667E-15	3.257E-12
cellular component assembly involved in morphogenesis	GO:0010927		3.603E-15	2.934E-12
myofibril assembly	GO:0030239		2.337E-14	1.427E-11
muscle cell development	GO:0055001		4.543E-14	2.22E-11
response to calcium ion	GO:0051592		5.971E-14	2.431E-11
response to metal ion	GO:0010038		5.563E-13	1.941E-10
striated muscle cell differentiation	GO:0051146		8.707E-13	2.659E-10
response to inorganic substance	GO:0010035		1.214E-12	3.295E-10
muscle cell differentiation	GO:0042692		3.416E-10	8.346E-08
regulation of mitochondrial membrane permeability	GO:0046902		3.168E-09	7.036E-07

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		1.969E-15	4.736E-12
cellular component assembly involved in morphogenesis	GO:0010927		6.807E-15	8.189E-12
actomyosin structure organization	GO:0031032		6.807E-15	5.459E-12
myofibril assembly	GO:0030239		5.45E-14	3.278E-11
response to calcium ion	GO:0051592		9.647E-14	4.642E-11
muscle cell development	GO:0055001		1.058E-13	4.244E-11
response to metal ion	GO:0010038		8.785E-13	3.019E-10
response to inorganic substance	GO:0010035		1.993E-12	5.994E-10
striated muscle cell differentiation	GO:0051146		2.019E-12	5.398E-10
muscle cell differentiation	GO:0042692		6.963E-10	1.675E-07
regulation of mitochondrial membrane permeability	GO:0046902		4.651E-09	1.017E-06

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		3.948E-15	9.081E-12
cellular component assembly involved in morphogenesis	GO:0010927		1.206E-14	1.387E-11
actomyosin structure organization	GO:0031032		2.487E-14	1.906E-11
myofibril assembly	GO:0030239		1.907E-13	1.097E-10
response to calcium ion	GO:0051592		2.181E-13	1.003E-10
muscle cell development	GO:0055001		4.025E-13	1.543E-10
response to metal ion	GO:0010038		3.145E-12	1.033E-09
striated muscle cell differentiation	GO:0051146		6.199E-12	1.782E-09
response to inorganic substance	GO:0010035		6.904E-12	1.764E-09
muscle cell differentiation	GO:0042692		2.312E-09	5.318E-07
regulation of mitochondrial membrane permeability	GO:0046902		1.363E-08	2.85E-06

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
release of cytochrome c from mitochondria	GO:0001836		2.319E-07	4.273E-04
apoptotic mitochondrial changes	GO:0008637		6.875E-07	6.336E-04
response to hormone stimulus	GO:0009725		9.005E-07	5.532E-04
cellular response to hormone stimulus	GO:0032870		1.295E-06	5.965E-04
regulation of DNA metabolic process	GO:0051052		2.144E-06	7.903E-04
mitochondrial membrane organization	GO:0007006		2.3E-06	7.066E-04
leukocyte homeostasis	GO:0001776		4.341E-06	1.143E-03
insulin-like growth factor receptor signaling pathway	GO:0048009		4.521E-06	1.042E-03
T cell lineage commitment	GO:0002360		4.521E-06	9.258E-04
regulation of protein homodimerization activity	GO:0043496		4.521E-06	8.333E-04
cell junction assembly	GO:0034329		7.48E-06	1.253E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
sarcomere organization	GO:0045214		3.948E-15	9.081E-12
cellular component assembly involved in morphogenesis	GO:0010927		1.206E-14	1.387E-11
actomyosin structure organization	GO:0031032		2.487E-14	1.906E-11
myofibril assembly	GO:0030239		1.907E-13	1.097E-10
response to calcium ion	GO:0051592		2.181E-13	1.003E-10
muscle cell development	GO:0055001		4.025E-13	1.543E-10
response to metal ion	GO:0010038		3.145E-12	1.033E-09
striated muscle cell differentiation	GO:0051146		6.199E-12	1.782E-09
response to inorganic substance	GO:0010035		6.904E-12	1.764E-09
muscle cell differentiation	GO:0042692		2.312E-09	5.318E-07
regulation of mitochondrial membrane permeability	GO:0046902		1.363E-08	2.85E-06