Study Desmedt-ER-neg

Study informations

165 subnetworks in total page | file

2310 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6134

score

Expression data for subnetwork 6134 in each dataset

IPC | Loi | Schmidt | VanDeVijver | Wang |

Subnetwork structure for each dataset

Score for each gene in subnetwork 6134 in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	IPC	Loi	Schmidt	VanDeVijver	Wang
SORBS1		57	19	1	13	-0.043	0.015	0.314	-0.072	0.200
AASS		2	743	2147	2126	-0.047	0.229	0.021	0.187	0.002
NDRG1		6	301	658	646	0.222	0.143	-0.040	-0.018	0.242
TP53		85	7	1	6	-0.167	0.148	-0.027	0.252	0.147
ADD2		8	222	614	599	0.113	-0.022	-0.061	0.270	0.180
CSNK2A1		3	557	1510	1486	-0.215	0.029	undef	0.122	undef
RAB2A		1	1195	2147	2151	0.083	0.049	-0.129	0.211	0.191
ERBB2		141	1	1	1	-0.103	0.092	-0.090	0.267	0.046
CCNB1		4	440	1116	1101	0.241	-0.056	0.001	undef	-0.043
BARD1		69	12	141	132	0.179	-0.165	0.086	0.245	-0.104
SDC1		2	743	1954	1933	0.172	0.241	-0.088	0.179	0.059
SYTL2		1	1195	2147	2151	0.063	0.186	undef	undef	undef
ARHGEF16		10	167	296	283	0.096	0.036	-0.047	0.200	0.038
GOLGA1		1	1195	2147	2151	-0.179	0.089	0.081	0.051	-0.064
CCND1		26	52	1	24	-0.258	0.074	0.117	undef	0.003
CCNA2		21	73	179	183	0.176	-0.053	0.188	-0.078	0.246
CTNNB1		43	25	83	81	-0.113	0.187	0.159	-0.090	0.239
NDUFB8		5	360	696	680	0.286	-0.012	0.340	-0.171	0.205
TP53BP2		11	148	692	668	0.245	-0.012	0.129	0.021	0.017
PPP1CA		2	743	1621	1611	0.076	-0.061	0.020	0.196	-0.168
LAMA4		13	124	696	670	-0.016	0.138	0.209	0.172	0.343
MAP3K3		4	440	1364	1330	0.085	0.046	0.028	-0.035	0.094
RPS27L		2	743	1364	1363	0.131	0.039	-0.033	-0.098	0.026
RPL38		2	743	141	197	0.222	0.151	0.241	-0.203	-0.171
CDK1		63	15	83	79	0.265	-0.195	0.106	0.088	0.031
ADM		10	167	682	653	0.255	0.187	0.091	0.169	0.212
BNIPL		2	743	1735	1721	0.144	0.072	undef	undef	undef
YWHAG		24	62	296	279	0.067	0.024	undef	0.266	undef
EPB41		2	743	318	346	0.082	-0.247	0.000	-0.179	-0.042
TIMM13		1	1195	2147	2151	0.091	-0.078	0.164	undef	0.089
DCLK1		7	256	141	151	-0.145	-0.006	-0.048	0.188	-0.035
P4HA1		2	743	957	958	-0.011	0.089	-0.020	undef	0.169
LPL		13	124	236	230	-0.102	-0.062	0.292	0.087	-0.105
COPS6		16	104	1	31	0.147	-0.068	0.128	0.216	0.065
EIF2B3		1	1195	2147	2151	0.115	-0.039	-0.013	undef	-0.110
LZTS1		3	557	2147	2108	-0.008	-0.089	0.043	0.147	0.063
PTN		24	62	236	225	undef	0.022	0.000	0.054	-0.092
NDUFS1		1	1195	2147	2151	-0.013	-0.045	-0.123	undef	0.061
EXOSC3		3	557	552	558	0.107	0.121	undef	-0.074	undef
SULT1E1		1	1195	2147	2151	-0.120	-0.008	-0.110	-0.040	0.245
FLOT1		2	743	1102	1102	0.076	0.004	-0.095	0.188	-0.095
PBX3		2	743	983	988	0.065	0.008	0.034	0.103	0.021
KLC1		4	440	1055	1035	0.071	0.189	0.204	0.139	0.132
KIAA1377		18	86	141	136	-0.095	0.116	undef	0.198	undef
RAB6A		2	743	842	854	0.054	-0.037	-0.038	0.208	-0.164
GDI1		3	557	842	834	0.219	0.094	0.049	0.181	0.049
KIF5B		2	743	2111	2085	0.003	0.010	-0.104	0.082	-0.149
GOLM1		8	222	1534	1489	0.109	0.161	-0.217	0.170	-0.060
RB1		31	43	1	22	0.013	-0.051	0.057	0.100	-0.082
CDH7		1	1195	2147	2151	undef	-0.025	-0.088	0.162	0.156
FGFR3		9	196	179	195	0.160	0.071	0.018	-0.050	-0.111
NDUFA2		2	743	696	717	0.159	-0.014	0.084	-0.037	-0.022
MYC		72	10	1	8	-0.101	-0.169	0.188	undef	-0.134
JUNB		20	81	179	185	0.057	0.086	0.065	0.001	-0.015
STC2		5	360	236	242	-0.009	0.056	0.181	-0.185	0.016
PTPRZ1		9	196	570	554	-0.114	0.183	0.233	-0.316	-0.095
BCL2		37	32	83	82	-0.077	-0.035	0.128	-0.106	0.043
NDUFS8		3	557	696	695	0.013	-0.088	-0.150	0.176	0.030
MYCN		7	256	764	756	0.125	0.057	-0.003	-0.081	-0.084
CCND2		5	360	1492	1453	0.022	-0.011	-0.072	-0.153	-0.029
NCOA2		3	557	1165	1151	-0.078	0.080	-0.159	0.104	0.057
SP1		72	10	83	77	0.222	-0.254	0.239	0.020	0.082
MCRS1		1	1195	2147	2151	0.098	-0.047	-0.039	0.051	-0.169
TPM2		4	440	1034	1015	0.007	0.269	0.212	0.051	0.203
KIF20A		1	1195	2147	2151	0.233	-0.083	0.073	-0.035	-0.005
ESRRG		6	301	614	602	-0.205	0.197	-0.007	0.155	-0.085
ECHS1		2	743	1190	1189	0.028	0.053	0.156	0.205	-0.042
EDN1		6	301	682	669	0.100	0.126	0.249	-0.086	0.121
FOS		42	27	1	17	-0.137	0.129	0.185	-0.144	0.234
PBX2		5	360	1	56	-0.122	-0.073	0.264	-0.095	0.092
CDK5R1		17	95	552	521	-0.150	0.038	-0.096	0.121	0.091
DEXI		1	1195	2147	2151	0.007	-0.053	0.145	0.079	0.209
CDH24		1	1195	2147	2151	-0.048	0.141	undef	undef	undef
PSMB10		1	1195	2147	2151	0.213	-0.213	-0.123	-0.276	-0.046
EIF2S3		1	1195	2147	2151	0.009	-0.092	0.011	undef	-0.104
HTT		14	117	141	140	-0.016	-0.015	0.075	0.092	-0.093
TFDP1		6	301	806	783	0.123	-0.178	0.129	undef	-0.065
CUL2		7	256	842	816	0.124	-0.192	-0.090	-0.035	0.166
SH3BP4		4	440	957	942	-0.105	0.108	-0.100	0.246	-0.003
PML		6	301	478	473	-0.068	-0.010	-0.007	-0.153	-0.070
FHL1		14	117	614	591	-0.041	0.104	0.301	undef	0.266
WDR33		2	743	1364	1363	0.174	-0.117	0.001	-0.067	0.083
KRT18		8	222	590	569	0.148	0.100	-0.083	0.024	-0.053
CDK2		31	43	179	174	0.196	-0.096	0.109	0.001	0.362
CLEC3B		2	743	928	929	0.009	-0.021	0.139	undef	0.033
CDKN2A		60	17	1	11	0.263	-0.113	0.111	undef	-0.105

GO Enrichment output for subnetwork 6134 in each dataset

IPC file

Name	Accession Number	Link	P-val	Corrected P-val
induction of apoptosis by intracellular signals	GO:0008629		1.797E-08	4.39E-05
interphase of mitotic cell cycle	GO:0051329		1.885E-08	2.302E-05
G1/S transition of mitotic cell cycle	GO:0000082		2.108E-08	1.716E-05
G1 DNA damage checkpoint	GO:0031571		6.309E-08	3.853E-05
apoptotic mitochondrial changes	GO:0008637		1.695E-07	8.28E-05
DNA damage response. signal transduction by p53 class mediator resulting in induction of apoptosis	GO:0042771		3.727E-07	1.518E-04
cell cycle checkpoint	GO:0000075		4.554E-07	1.589E-04
release of cytochrome c from mitochondria	GO:0001836		1.74E-06	5.314E-04
mitochondrion organization	GO:0007005		1.83E-06	4.968E-04
G1/S transition checkpoint	GO:0031575		2.361E-06	5.767E-04
regulation of mitochondrial membrane permeability	GO:0046902		2.79E-06	6.196E-04

Loi file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.928E-08	7.044E-05
induction of apoptosis by intracellular signals	GO:0008629		3.189E-08	3.836E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.738E-08	2.998E-05
interphase	GO:0051325		3.849E-08	2.315E-05
G1 DNA damage checkpoint	GO:0031571		8.856E-08	4.261E-05
apoptotic mitochondrial changes	GO:0008637		2.573E-07	1.032E-04
DNA damage response. signal transduction by p53 class mediator resulting in induction of apoptosis	GO:0042771		5.224E-07	1.796E-04
cell cycle checkpoint	GO:0000075		6.553E-07	1.971E-04
release of cytochrome c from mitochondria	GO:0001836		2.435E-06	6.509E-04
mitochondrion organization	GO:0007005		2.944E-06	7.083E-04
G1/S transition checkpoint	GO:0031575		3.301E-06	7.221E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		5.191E-08	1.194E-04
interphase	GO:0051325		6.356E-08	7.31E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.401E-08	5.674E-05
G1 DNA damage checkpoint	GO:0031571		1.786E-07	1.027E-04
apoptotic mitochondrial changes	GO:0008637		3.406E-07	1.567E-04
DNA damage response. signal transduction by p53 class mediator resulting in induction of apoptosis	GO:0042771		1.051E-06	4.027E-04
induction of apoptosis by intracellular signals	GO:0008629		1.089E-06	3.578E-04
cell cycle checkpoint	GO:0000075		1.227E-06	3.529E-04
mitochondrion organization	GO:0007005		3.019E-06	7.714E-04
ear development	GO:0043583		4.201E-06	9.663E-04
G1/S transition checkpoint	GO:0031575		4.875E-06	1.019E-03

VanDeVijver file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of mitotic cell cycle	GO:0007346		9.247E-09	1.704E-05
G1 DNA damage checkpoint	GO:0031571		9.448E-08	8.706E-05
DNA damage response. signal transduction by p53 class mediator resulting in induction of apoptosis	GO:0042771		4.349E-07	2.672E-04
DNA damage checkpoint	GO:0000077		5.773E-07	2.66E-04
G1/S transition of mitotic cell cycle	GO:0000082		9.961E-07	3.672E-04
DNA integrity checkpoint	GO:0031570		9.961E-07	3.06E-04
cell cycle checkpoint	GO:0000075		1.62E-06	4.264E-04
mitotic cell cycle checkpoint	GO:0007093		1.624E-06	3.742E-04
G1/S transition checkpoint	GO:0031575		2.008E-06	4.112E-04
regulation of cell size	GO:0008361		2.402E-06	4.426E-04
induction of apoptosis by intracellular signals	GO:0008629		3.109E-06	5.208E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		5.191E-08	1.194E-04
interphase	GO:0051325		6.356E-08	7.31E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.401E-08	5.674E-05
G1 DNA damage checkpoint	GO:0031571		1.786E-07	1.027E-04
apoptotic mitochondrial changes	GO:0008637		3.406E-07	1.567E-04
DNA damage response. signal transduction by p53 class mediator resulting in induction of apoptosis	GO:0042771		1.051E-06	4.027E-04
induction of apoptosis by intracellular signals	GO:0008629		1.089E-06	3.578E-04
cell cycle checkpoint	GO:0000075		1.227E-06	3.529E-04
mitochondrion organization	GO:0007005		3.019E-06	7.714E-04
ear development	GO:0043583		4.201E-06	9.663E-04
G1/S transition checkpoint	GO:0031575		4.875E-06	1.019E-03