Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9650-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1769 | 1.843e-02 | 3.377e-02 | 7.145e-02 |
|---|
| IPC-NIBC-129 | 0.1735 | 7.543e-02 | 4.414e-02 | 3.113e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2138 | 5.202e-02 | 3.839e-02 | 4.266e-01 |
|---|
| Loi_GPL570 | 0.2400 | 2.311e-01 | 2.225e-01 | 6.686e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1990 | 1.107e-02 | 1.230e-04 | 1.165e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3038 | 3.292e-02 | 1.001e-02 | 2.055e-01 |
|---|
| Schmidt | 0.1369 | 2.908e-02 | 3.966e-02 | 1.612e-01 |
|---|
| Sotiriou | 0.2590 | 5.909e-02 | 4.239e-02 | 3.874e-01 |
|---|
| Zhang | 0.3539 | 9.988e-03 | 1.484e-02 | 4.058e-02 |
|---|
Expression data for subnetwork 9650-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9650-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| pin1 |   | 5 | 13 | 26 | 14 | -0.012 | 0.181 | 0.133 | 0.270 | 0.112 | 0.072 | 0.063 | 0.161 | 0.259 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| pkmyt1 | | 5 | 13 | 26 | 14 | 0.219 | 0.222 | 0.151 | 0.190 | 0.092 | 0.202 | 0.156 | 0.061 | 0.288 |
|---|
| mtfr1 | | 1 | 57 | 107 | 112 | 0.058 | 0.142 | 0.080 | -0.054 | 0.129 | 0.201 | 0.066 | 0.070 | 0.139 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 9650-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.296E-06 | 2.982E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 1.543E-06 | 1.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 5.277E-06 | 3.034E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.192E-05 | 0.01008273 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.831E-05 | 0.01468716 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.614E-05 | 0.0151598 |
|---|
| fat cell differentiation | GO:0045444 | | 5.032E-05 | 0.0144674 |
|---|
| response to calcium ion | GO:0051592 | | 1.417E-04 | 0.03621035 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.639E-04 | 0.03770249 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.796E-04 | 0.03756002 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.177E-07 | 5.319E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 2.953E-07 | 3.607E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 8.711E-07 | 7.093E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.24E-06 | 7.575E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.405E-06 | 4.107E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.437E-05 | 5.85E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 1.671E-05 | 5.831E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.794E-05 | 5.479E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.565E-05 | 0.0123919 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.974E-05 | 0.0121521 |
|---|
| response to calcium ion | GO:0051592 | | 5.185E-05 | 0.01151617 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.575E-07 | 8.602E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 4.849E-07 | 5.833E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.43E-06 | 1.147E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.727E-06 | 1.039E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.053E-05 | 5.069E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.847E-05 | 7.405E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 2.16E-05 | 7.424E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.326E-05 | 6.995E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.353E-05 | 0.01698376 |
|---|
| response to calcium ion | GO:0051592 | | 6.635E-05 | 0.01596261 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.922E-05 | 0.01514038 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.177E-07 | 5.319E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 2.953E-07 | 3.607E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 8.711E-07 | 7.093E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.24E-06 | 7.575E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.405E-06 | 4.107E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.437E-05 | 5.85E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 1.671E-05 | 5.831E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.794E-05 | 5.479E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.565E-05 | 0.0123919 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.974E-05 | 0.0121521 |
|---|
| response to calcium ion | GO:0051592 | | 5.185E-05 | 0.01151617 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.575E-07 | 8.602E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 4.849E-07 | 5.833E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.43E-06 | 1.147E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.727E-06 | 1.039E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.053E-05 | 5.069E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.847E-05 | 7.405E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 2.16E-05 | 7.424E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.326E-05 | 6.995E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.353E-05 | 0.01698376 |
|---|
| response to calcium ion | GO:0051592 | | 6.635E-05 | 0.01596261 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.922E-05 | 0.01514038 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.575E-07 | 8.602E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 4.849E-07 | 5.833E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.43E-06 | 1.147E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.727E-06 | 1.039E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.053E-05 | 5.069E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.847E-05 | 7.405E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 2.16E-05 | 7.424E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.326E-05 | 6.995E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.353E-05 | 0.01698376 |
|---|
| response to calcium ion | GO:0051592 | | 6.635E-05 | 0.01596261 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.922E-05 | 0.01514038 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.296E-06 | 2.982E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 1.543E-06 | 1.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 5.277E-06 | 3.034E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.192E-05 | 0.01008273 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.831E-05 | 0.01468716 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.614E-05 | 0.0151598 |
|---|
| fat cell differentiation | GO:0045444 | | 5.032E-05 | 0.0144674 |
|---|
| response to calcium ion | GO:0051592 | | 1.417E-04 | 0.03621035 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.639E-04 | 0.03770249 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.796E-04 | 0.03756002 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.296E-06 | 2.982E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 1.543E-06 | 1.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 5.277E-06 | 3.034E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.192E-05 | 0.01008273 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.831E-05 | 0.01468716 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.614E-05 | 0.0151598 |
|---|
| fat cell differentiation | GO:0045444 | | 5.032E-05 | 0.0144674 |
|---|
| response to calcium ion | GO:0051592 | | 1.417E-04 | 0.03621035 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.639E-04 | 0.03770249 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.796E-04 | 0.03756002 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.296E-06 | 2.982E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 1.543E-06 | 1.775E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 5.277E-06 | 3.034E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.192E-05 | 0.01008273 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.831E-05 | 0.01468716 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.614E-05 | 0.0151598 |
|---|
| fat cell differentiation | GO:0045444 | | 5.032E-05 | 0.0144674 |
|---|
| response to calcium ion | GO:0051592 | | 1.417E-04 | 0.03621035 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.639E-04 | 0.03770249 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.796E-04 | 0.03756002 |
|---|
