Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 9616-11-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2597	2.300e-02	4.112e-02	8.720e-02
IPC-NIBC-129	0.1232	1.972e-02	8.854e-03	6.557e-02
Ivshina_GPL96-GPL97	0.2031	1.385e-01	1.217e-01	7.516e-01
Loi_GPL570	0.3461	3.313e-01	3.467e-01	7.966e-01
Loi_GPL96-GPL97	0.1492	5.020e-04	0.000e+00	8.210e-04
Pawitan_GPL96-GPL97	0.3823	4.260e-01	3.348e-01	9.342e-01
Schmidt	0.1090	2.235e-02	3.078e-02	1.253e-01
Sotiriou	0.2757	1.355e-01	1.015e-01	6.636e-01
Zhang	0.1126	2.693e-03	3.989e-03	1.305e-02

Expression data for subnetwork 9616-11-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 9616-11-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
rnf7		1	57	165	167	-0.027	-0.106	0.061	0.093	0.074	0.162	0.083	0.035	0.257
agtpbp1		2	35	118	111	0.086	0.219	0.009	0.181	0.071	0.026	0.110	0.151	0.064
hspb1		5	13	118	99	0.190	-0.050	0.184	0.212	0.231	0.289	-0.021	0.201	-0.077
cycs		4	19	118	103	0.073	0.206	0.080	0.094	0.117	0.272	0.157	0.077	0.135
ppfia1		2	35	165	157	0.164	0.080	0.149	0.269	0.151	0.225	0.036	0.176	0.127

GO Enrichment output for subnetwork 9616-11-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
induction of apoptosis by oxidative stress	GO:0008631		1.831E-06	4.212E-03
activation of caspase activity by cytochrome c	GO:0008635		2.746E-06	3.158E-03
DNA fragmentation involved in apoptosis	GO:0006309		1.918E-05	0.01470735
cell structure disassembly during apoptosis	GO:0006921		3.121E-05	0.01794753
apoptotic nuclear changes	GO:0030262		3.121E-05	0.01435803
DNA catabolic process. endonucleolytic	GO:0000737		3.831E-05	0.01468716
response to heat	GO:0009408		7.92E-05	0.02602353
nucleus organization	GO:0006997		9.607E-05	0.0276198
induction of apoptosis by intracellular signals	GO:0008629		1.417E-04	0.03621035
cellular component disassembly	GO:0022411		1.563E-04	0.03595711
activation of caspase activity	GO:0006919		1.639E-04	0.03427499

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
response to redox state	GO:0051775		2.204E-10	5.385E-07
induction of apoptosis by oxidative stress	GO:0008631		7.712E-10	9.42E-07
activation of caspase activity by cytochrome c	GO:0008635		1.234E-09	1.005E-06
DNA fragmentation involved in apoptosis	GO:0006309		1.496E-08	9.135E-06
cell structure disassembly during apoptosis	GO:0006921		2.924E-08	1.428E-05
apoptotic nuclear changes	GO:0030262		3.385E-08	1.378E-05
DNA catabolic process. endonucleolytic	GO:0000737		4.447E-08	1.552E-05
nucleus organization	GO:0006997		2.165E-07	6.611E-05
induction of apoptosis by intracellular signals	GO:0008629		3.107E-07	8.432E-05
cellular component disassembly	GO:0022411		3.785E-07	9.246E-05
activation of caspase activity	GO:0006919		4.287E-07	9.522E-05

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to redox state	GO:0051775		4.83E-10	1.162E-06
induction of apoptosis by oxidative stress	GO:0008631		1.69E-09	2.033E-06
activation of caspase activity by cytochrome c	GO:0008635		2.703E-09	2.168E-06
DNA fragmentation involved in apoptosis	GO:0006309		3.276E-08	1.97E-05
cell structure disassembly during apoptosis	GO:0006921		6.401E-08	3.08E-05
apoptotic nuclear changes	GO:0030262		7.411E-08	2.972E-05
DNA catabolic process. endonucleolytic	GO:0000737		9.735E-08	3.346E-05
nucleus organization	GO:0006997		4.045E-07	1.217E-04
induction of apoptosis by intracellular signals	GO:0008629		6.793E-07	1.816E-04
cellular component disassembly	GO:0022411		8.275E-07	1.991E-04
activation of caspase activity	GO:0006919		8.275E-07	1.81E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
response to redox state	GO:0051775		2.204E-10	5.385E-07
induction of apoptosis by oxidative stress	GO:0008631		7.712E-10	9.42E-07
activation of caspase activity by cytochrome c	GO:0008635		1.234E-09	1.005E-06
DNA fragmentation involved in apoptosis	GO:0006309		1.496E-08	9.135E-06
cell structure disassembly during apoptosis	GO:0006921		2.924E-08	1.428E-05
apoptotic nuclear changes	GO:0030262		3.385E-08	1.378E-05
DNA catabolic process. endonucleolytic	GO:0000737		4.447E-08	1.552E-05
nucleus organization	GO:0006997		2.165E-07	6.611E-05
induction of apoptosis by intracellular signals	GO:0008629		3.107E-07	8.432E-05
cellular component disassembly	GO:0022411		3.785E-07	9.246E-05
activation of caspase activity	GO:0006919		4.287E-07	9.522E-05

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to redox state	GO:0051775		4.83E-10	1.162E-06
induction of apoptosis by oxidative stress	GO:0008631		1.69E-09	2.033E-06
activation of caspase activity by cytochrome c	GO:0008635		2.703E-09	2.168E-06
DNA fragmentation involved in apoptosis	GO:0006309		3.276E-08	1.97E-05
cell structure disassembly during apoptosis	GO:0006921		6.401E-08	3.08E-05
apoptotic nuclear changes	GO:0030262		7.411E-08	2.972E-05
DNA catabolic process. endonucleolytic	GO:0000737		9.735E-08	3.346E-05
nucleus organization	GO:0006997		4.045E-07	1.217E-04
induction of apoptosis by intracellular signals	GO:0008629		6.793E-07	1.816E-04
cellular component disassembly	GO:0022411		8.275E-07	1.991E-04
activation of caspase activity	GO:0006919		8.275E-07	1.81E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to redox state	GO:0051775		4.83E-10	1.162E-06
induction of apoptosis by oxidative stress	GO:0008631		1.69E-09	2.033E-06
activation of caspase activity by cytochrome c	GO:0008635		2.703E-09	2.168E-06
DNA fragmentation involved in apoptosis	GO:0006309		3.276E-08	1.97E-05
cell structure disassembly during apoptosis	GO:0006921		6.401E-08	3.08E-05
apoptotic nuclear changes	GO:0030262		7.411E-08	2.972E-05
DNA catabolic process. endonucleolytic	GO:0000737		9.735E-08	3.346E-05
nucleus organization	GO:0006997		4.045E-07	1.217E-04
induction of apoptosis by intracellular signals	GO:0008629		6.793E-07	1.816E-04
cellular component disassembly	GO:0022411		8.275E-07	1.991E-04
activation of caspase activity	GO:0006919		8.275E-07	1.81E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
induction of apoptosis by oxidative stress	GO:0008631		1.831E-06	4.212E-03
activation of caspase activity by cytochrome c	GO:0008635		2.746E-06	3.158E-03
DNA fragmentation involved in apoptosis	GO:0006309		1.918E-05	0.01470735
cell structure disassembly during apoptosis	GO:0006921		3.121E-05	0.01794753
apoptotic nuclear changes	GO:0030262		3.121E-05	0.01435803
DNA catabolic process. endonucleolytic	GO:0000737		3.831E-05	0.01468716
response to heat	GO:0009408		7.92E-05	0.02602353
nucleus organization	GO:0006997		9.607E-05	0.0276198
induction of apoptosis by intracellular signals	GO:0008629		1.417E-04	0.03621035
cellular component disassembly	GO:0022411		1.563E-04	0.03595711
activation of caspase activity	GO:0006919		1.639E-04	0.03427499

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
induction of apoptosis by oxidative stress	GO:0008631		1.831E-06	4.212E-03
activation of caspase activity by cytochrome c	GO:0008635		2.746E-06	3.158E-03
DNA fragmentation involved in apoptosis	GO:0006309		1.918E-05	0.01470735
cell structure disassembly during apoptosis	GO:0006921		3.121E-05	0.01794753
apoptotic nuclear changes	GO:0030262		3.121E-05	0.01435803
DNA catabolic process. endonucleolytic	GO:0000737		3.831E-05	0.01468716
response to heat	GO:0009408		7.92E-05	0.02602353
nucleus organization	GO:0006997		9.607E-05	0.0276198
induction of apoptosis by intracellular signals	GO:0008629		1.417E-04	0.03621035
cellular component disassembly	GO:0022411		1.563E-04	0.03595711
activation of caspase activity	GO:0006919		1.639E-04	0.03427499

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
induction of apoptosis by oxidative stress	GO:0008631		1.831E-06	4.212E-03
activation of caspase activity by cytochrome c	GO:0008635		2.746E-06	3.158E-03
DNA fragmentation involved in apoptosis	GO:0006309		1.918E-05	0.01470735
cell structure disassembly during apoptosis	GO:0006921		3.121E-05	0.01794753
apoptotic nuclear changes	GO:0030262		3.121E-05	0.01435803
DNA catabolic process. endonucleolytic	GO:0000737		3.831E-05	0.01468716
response to heat	GO:0009408		7.92E-05	0.02602353
nucleus organization	GO:0006997		9.607E-05	0.0276198
induction of apoptosis by intracellular signals	GO:0008629		1.417E-04	0.03621035
cellular component disassembly	GO:0022411		1.563E-04	0.03595711
activation of caspase activity	GO:0006919		1.639E-04	0.03427499