Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7517-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1837 | 1.086e-02 | 2.108e-02 | 4.400e-02 |
|---|
| IPC-NIBC-129 | 0.2063 | 8.342e-02 | 4.981e-02 | 3.434e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2392 | 2.706e-02 | 1.760e-02 | 2.544e-01 |
|---|
| Loi_GPL570 | 0.2318 | 1.063e-01 | 8.134e-02 | 4.092e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1646 | 8.652e-03 | 6.000e-05 | 8.468e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3349 | 4.147e-02 | 1.377e-02 | 2.494e-01 |
|---|
| Schmidt | 0.1947 | 1.587e-02 | 2.211e-02 | 8.919e-02 |
|---|
| Sotiriou | 0.2972 | 1.052e-01 | 7.765e-02 | 5.748e-01 |
|---|
| Zhang | 0.3331 | 5.951e-03 | 8.846e-03 | 2.602e-02 |
|---|
Expression data for subnetwork 7517-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7517-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| cdkn3 |   | 12 | 5 | 31 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.271 |
|---|
| tsc1 | | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| fancg | | 3 | 25 | 31 | 30 | 0.081 | 0.214 | 0.140 | 0.118 | 0.100 | 0.215 | 0.173 | 0.118 | 0.070 |
|---|
| xrcc3 | | 1 | 57 | 31 | 43 | 0.098 | 0.050 | 0.012 | 0.095 | 0.077 | -0.004 | 0.093 | 0.064 | 0.194 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 7517-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 |  | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.506E-08 | 6.123E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 5.71E-08 | 6.975E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.021E-08 | 6.532E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 2.029E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 3.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 3.543E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 8.703E-07 | 3.037E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 3.986E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.95E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.552E-06 | 5.669E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.506E-08 | 6.123E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 5.71E-08 | 6.975E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.021E-08 | 6.532E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 2.029E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 3.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 3.543E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 8.703E-07 | 3.037E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 3.986E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.95E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.552E-06 | 5.669E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
