Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7422-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1906 | 1.367e-02 | 2.588e-02 | 5.441e-02 |
|---|
| IPC-NIBC-129 | 0.2756 | 2.021e-02 | 9.118e-03 | 6.770e-02 |
|---|
| Ivshina_GPL96-GPL97 | 0.2282 | 6.627e-03 | 3.234e-03 | 6.385e-02 |
|---|
| Loi_GPL570 | 0.3442 | 5.210e-02 | 3.116e-02 | 2.366e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1581 | 6.754e-03 | 2.800e-05 | 6.047e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3061 | 1.456e-01 | 7.750e-02 | 6.059e-01 |
|---|
| Schmidt | 0.2460 | 1.302e-02 | 1.826e-02 | 7.284e-02 |
|---|
| Sotiriou | 0.3097 | 1.170e-01 | 8.692e-02 | 6.122e-01 |
|---|
| Zhang | 0.2180 | 9.615e-03 | 1.429e-02 | 3.928e-02 |
|---|
Expression data for subnetwork 7422-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7422-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| sp1 |   | 14 | 4 | 11 | 6 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.091 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| sf3a2 | | 1 | 57 | 11 | 23 | 0.019 | 0.073 | 0.116 | 0.118 | 0.089 | 0.271 | 0.102 | 0.137 | 0.072 |
|---|
| vegfa | | 1 | 57 | 11 | 23 | 0.122 | 0.407 | 0.031 | 0.140 | 0.118 | -0.021 | 0.075 | 0.051 | 0.088 |
|---|
| snrpd1 | | 1 | 57 | 11 | 23 | -0.026 | 0.257 | 0.128 | 0.254 | 0.106 | 0.155 | 0.190 | 0.111 | 0.011 |
|---|
| ybx1 | | 1 | 57 | 11 | 23 | 0.056 | 0.247 | 0.058 | 0.045 | 0.065 | 0.123 | 0.128 | 0.056 | -0.021 |
|---|
| sema3f | | 1 | 57 | 11 | 23 | 0.102 | -0.053 | 0.093 | 0.151 | 0.123 | 0.130 | 0.090 | 0.121 | 0.047 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 7422-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 |  | 5.097E-06 | 0.01172344 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.241E-05 | 0.01427018 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.241E-05 | 9.513E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.646E-05 | 9.463E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.762E-05 | 8.106E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.86E-05 | 7.13E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 2.602E-05 | 6.65E-03 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 3.467E-05 | 7.975E-03 |
|---|
| positive regulation of endothelial cell migration | GO:0010595 | | 3.467E-05 | 7.25E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 1.051E-06 | 2.568E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.022E-06 | 3.691E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 3.321E-06 | 2.704E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 3.321E-06 | 2.028E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 3.321E-06 | 1.623E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 3.321E-06 | 1.352E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.855E-06 | 1.345E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 4.98E-06 | 1.521E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 6.969E-06 | 1.892E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 2.269E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 9.289E-06 | 2.063E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 1.43E-06 | 3.441E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.625E-06 | 5.564E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 4.625E-06 | 3.709E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 4.625E-06 | 2.225E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.952E-06 | 1.986E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 5.273E-06 | 1.812E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.934E-06 | 2.085E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 9.704E-06 | 2.594E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 3.112E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 1.293E-05 | 2.829E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 1.051E-06 | 2.568E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.022E-06 | 3.691E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 3.321E-06 | 2.704E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 3.321E-06 | 2.028E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 3.321E-06 | 1.623E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 3.321E-06 | 1.352E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 3.855E-06 | 1.345E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 4.98E-06 | 1.521E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 6.969E-06 | 1.892E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 2.269E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 9.289E-06 | 2.063E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 1.43E-06 | 3.441E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.625E-06 | 5.564E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 4.625E-06 | 3.709E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 4.625E-06 | 2.225E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.952E-06 | 1.986E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 5.273E-06 | 1.812E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.934E-06 | 2.085E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 9.704E-06 | 2.594E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 3.112E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 1.293E-05 | 2.829E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 1.43E-06 | 3.441E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 4.625E-06 | 5.564E-03 |
|---|
| nuclear mRNA 3'-splice site recognition | GO:0000389 | | 4.625E-06 | 3.709E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 4.625E-06 | 2.225E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.952E-06 | 1.986E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 5.273E-06 | 1.812E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.934E-06 | 2.085E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 9.704E-06 | 2.594E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 3.112E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 1.293E-05 | 2.829E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 5.097E-06 | 0.01172344 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.241E-05 | 0.01427018 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.241E-05 | 9.513E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.646E-05 | 9.463E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.762E-05 | 8.106E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.86E-05 | 7.13E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 2.602E-05 | 6.65E-03 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 3.467E-05 | 7.975E-03 |
|---|
| positive regulation of endothelial cell migration | GO:0010595 | | 3.467E-05 | 7.25E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 5.097E-06 | 0.01172344 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.241E-05 | 0.01427018 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.241E-05 | 9.513E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.646E-05 | 9.463E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.762E-05 | 8.106E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.86E-05 | 7.13E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 2.602E-05 | 6.65E-03 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 3.467E-05 | 7.975E-03 |
|---|
| positive regulation of endothelial cell migration | GO:0010595 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spliceosome assembly | GO:0000245 | | 5.097E-06 | 0.01172344 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.241E-05 | 0.01427018 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.241E-05 | 9.513E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.646E-05 | 9.463E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.762E-05 | 8.106E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.86E-05 | 7.13E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 1.86E-05 | 6.112E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 7.482E-03 |
|---|
| T-helper 1 type immune response | GO:0042088 | | 2.602E-05 | 6.65E-03 |
|---|
| induction of positive chemotaxis | GO:0050930 | | 3.467E-05 | 7.975E-03 |
|---|
| positive regulation of endothelial cell migration | GO:0010595 | | 3.467E-05 | 7.25E-03 |
|---|
