Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6949-8-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1714	1.585e-02	2.953e-02	6.231e-02
IPC-NIBC-129	0.1985	3.624e-02	1.834e-02	1.398e-01
Ivshina_GPL96-GPL97	0.2211	3.163e-02	2.122e-02	2.903e-01
Loi_GPL570	0.2983	7.841e-02	5.418e-02	3.269e-01
Loi_GPL96-GPL97	0.1745	1.348e-02	2.180e-04	1.484e-01
Pawitan_GPL96-GPL97	0.3037	1.224e-01	6.106e-02	5.468e-01
Schmidt	0.2167	1.876e-02	2.600e-02	1.055e-01
Sotiriou	0.2867	8.921e-02	6.528e-02	5.182e-01
Zhang	0.2342	9.999e-03	1.486e-02	4.061e-02

Expression data for subnetwork 6949-8-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 6949-8-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
sp1		14	4	11	6	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.091
pcna		9	7	56	42	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.123
tcof1		1	57	76	80	0.089	0.213	0.113	0.106	0.088	-0.033	0.173	0.106	0.022
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
slc25a5		5	13	29	20	0.053	0.214	0.106	0.218	0.115	0.221	0.177	0.141	-0.019
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 6949-8-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.592E-06	5.962E-03
plasminogen activation	GO:0031639		3.596E-06	4.135E-03
positive regulation of fibrinolysis	GO:0051919		5.392E-06	4.134E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	4.339E-03
transcription from RNA polymerase I promoter	GO:0006360		7.546E-06	3.471E-03
regulation of fibrinolysis	GO:0051917		1.006E-05	3.855E-03
zymogen activation	GO:0031638		1.615E-05	5.307E-03
rRNA transcription	GO:0009303		1.974E-05	5.674E-03
negative regulation of cell cycle process	GO:0010948		3.763E-05	9.615E-03
cellular response to unfolded protein	GO:0034620		4.299E-05	9.887E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.299E-05	8.988E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		5.041E-07	1.232E-03
meiotic chromosome segregation	GO:0045132		1.044E-06	1.276E-03
establishment of spindle localization	GO:0051293		1.566E-06	1.275E-03
plasminogen activation	GO:0031639		1.566E-06	9.565E-04
transcription from RNA polymerase I promoter	GO:0006360		2.192E-06	1.071E-03
positive regulation of fibrinolysis	GO:0051919		2.192E-06	8.926E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	1.02E-03
regulation of fibrinolysis	GO:0051917		4.695E-06	1.434E-03
zymogen activation	GO:0031638		6.883E-06	1.868E-03
rRNA transcription	GO:0009303		9.487E-06	2.318E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.251E-05	2.777E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		8.275E-07	1.991E-03
meiotic chromosome segregation	GO:0045132		1.454E-06	1.75E-03
plasminogen activation	GO:0031639		1.454E-06	1.166E-03
establishment of spindle localization	GO:0051293		2.181E-06	1.312E-03
positive regulation of fibrinolysis	GO:0051919		2.181E-06	1.05E-03
transcription from RNA polymerase I promoter	GO:0006360		3.053E-06	1.224E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.07E-06	1.399E-03
regulation of fibrinolysis	GO:0051917		5.231E-06	1.573E-03
zymogen activation	GO:0031638		7.988E-06	2.136E-03
rRNA transcription	GO:0009303		1.321E-05	3.178E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.741E-05	3.808E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		5.041E-07	1.232E-03
meiotic chromosome segregation	GO:0045132		1.044E-06	1.276E-03
establishment of spindle localization	GO:0051293		1.566E-06	1.275E-03
plasminogen activation	GO:0031639		1.566E-06	9.565E-04
transcription from RNA polymerase I promoter	GO:0006360		2.192E-06	1.071E-03
positive regulation of fibrinolysis	GO:0051919		2.192E-06	8.926E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	1.02E-03
regulation of fibrinolysis	GO:0051917		4.695E-06	1.434E-03
zymogen activation	GO:0031638		6.883E-06	1.868E-03
rRNA transcription	GO:0009303		9.487E-06	2.318E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.251E-05	2.777E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		8.275E-07	1.991E-03
meiotic chromosome segregation	GO:0045132		1.454E-06	1.75E-03
plasminogen activation	GO:0031639		1.454E-06	1.166E-03
establishment of spindle localization	GO:0051293		2.181E-06	1.312E-03
positive regulation of fibrinolysis	GO:0051919		2.181E-06	1.05E-03
transcription from RNA polymerase I promoter	GO:0006360		3.053E-06	1.224E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.07E-06	1.399E-03
regulation of fibrinolysis	GO:0051917		5.231E-06	1.573E-03
zymogen activation	GO:0031638		7.988E-06	2.136E-03
rRNA transcription	GO:0009303		1.321E-05	3.178E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.741E-05	3.808E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		8.275E-07	1.991E-03
meiotic chromosome segregation	GO:0045132		1.454E-06	1.75E-03
plasminogen activation	GO:0031639		1.454E-06	1.166E-03
establishment of spindle localization	GO:0051293		2.181E-06	1.312E-03
positive regulation of fibrinolysis	GO:0051919		2.181E-06	1.05E-03
transcription from RNA polymerase I promoter	GO:0006360		3.053E-06	1.224E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.07E-06	1.399E-03
regulation of fibrinolysis	GO:0051917		5.231E-06	1.573E-03
zymogen activation	GO:0031638		7.988E-06	2.136E-03
rRNA transcription	GO:0009303		1.321E-05	3.178E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.741E-05	3.808E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.592E-06	5.962E-03
plasminogen activation	GO:0031639		3.596E-06	4.135E-03
positive regulation of fibrinolysis	GO:0051919		5.392E-06	4.134E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	4.339E-03
transcription from RNA polymerase I promoter	GO:0006360		7.546E-06	3.471E-03
regulation of fibrinolysis	GO:0051917		1.006E-05	3.855E-03
zymogen activation	GO:0031638		1.615E-05	5.307E-03
rRNA transcription	GO:0009303		1.974E-05	5.674E-03
negative regulation of cell cycle process	GO:0010948		3.763E-05	9.615E-03
cellular response to unfolded protein	GO:0034620		4.299E-05	9.887E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.299E-05	8.988E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.592E-06	5.962E-03
plasminogen activation	GO:0031639		3.596E-06	4.135E-03
positive regulation of fibrinolysis	GO:0051919		5.392E-06	4.134E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	4.339E-03
transcription from RNA polymerase I promoter	GO:0006360		7.546E-06	3.471E-03
regulation of fibrinolysis	GO:0051917		1.006E-05	3.855E-03
zymogen activation	GO:0031638		1.615E-05	5.307E-03
rRNA transcription	GO:0009303		1.974E-05	5.674E-03
negative regulation of cell cycle process	GO:0010948		3.763E-05	9.615E-03
cellular response to unfolded protein	GO:0034620		4.299E-05	9.887E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.299E-05	8.988E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		2.592E-06	5.962E-03
plasminogen activation	GO:0031639		3.596E-06	4.135E-03
positive regulation of fibrinolysis	GO:0051919		5.392E-06	4.134E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	4.339E-03
transcription from RNA polymerase I promoter	GO:0006360		7.546E-06	3.471E-03
regulation of fibrinolysis	GO:0051917		1.006E-05	3.855E-03
zymogen activation	GO:0031638		1.615E-05	5.307E-03
rRNA transcription	GO:0009303		1.974E-05	5.674E-03
negative regulation of cell cycle process	GO:0010948		3.763E-05	9.615E-03
cellular response to unfolded protein	GO:0034620		4.299E-05	9.887E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		4.299E-05	8.988E-03