Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5604-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1871 | 1.050e-02 | 2.046e-02 | 4.264e-02 |
|---|
| IPC-NIBC-129 | 0.1561 | 1.030e-01 | 6.412e-02 | 4.171e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2409 | 7.332e-02 | 5.767e-02 | 5.370e-01 |
|---|
| Loi_GPL570 | 0.2148 | 9.036e-02 | 6.552e-02 | 3.636e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1915 | 7.657e-03 | 4.100e-05 | 7.186e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3860 | 1.029e-01 | 4.815e-02 | 4.900e-01 |
|---|
| Schmidt | 0.2065 | 1.882e-02 | 2.607e-02 | 1.058e-01 |
|---|
| Sotiriou | 0.2865 | 6.714e-02 | 4.845e-02 | 4.259e-01 |
|---|
| Zhang | 0.2503 | 2.530e-03 | 3.745e-03 | 1.235e-02 |
|---|
Expression data for subnetwork 5604-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5604-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| ccnb2 |   | 5 | 13 | 58 | 45 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.366 | 0.240 | 0.169 | 0.211 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| hras | | 3 | 25 | 58 | 50 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.245 | 0.086 | 0.208 | 0.003 |
|---|
| cdc25a | | 9 | 7 | 34 | 21 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | 0.207 | 0.211 | 0.016 | 0.183 |
|---|
| map2k1 | | 1 | 57 | 58 | 64 | 0.154 | 0.096 | 0.093 | 0.013 | 0.095 | 0.207 | 0.082 | 0.096 | undef |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 5604-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.767E-06 | 6.363E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 4.412E-06 | 5.074E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 4.734E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 8.231E-06 | 4.733E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 8.231E-06 | 3.786E-03 |
|---|
| thymus development | GO:0048538 | | 1.058E-05 | 4.055E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.322E-05 | 4.344E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 1.615E-05 | 4.644E-03 |
|---|
| response to light stimulus | GO:0009416 | | 1.873E-05 | 4.786E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 2.117E-05 | 4.869E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 2.289E-05 | 4.787E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.514E-07 | 2.08E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 3.57E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.922E-06 | 2.38E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.922E-06 | 1.785E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 4.695E-06 | 2.294E-03 |
|---|
| thymus development | GO:0048538 | | 5.737E-06 | 2.336E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 6.883E-06 | 2.402E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 9.487E-06 | 2.897E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.094E-05 | 2.971E-03 |
|---|
| regulation of neuronal synaptic plasticity | GO:0048168 | | 1.781E-05 | 4.351E-03 |
|---|
| visual learning | GO:0008542 | | 1.781E-05 | 3.955E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 1.838E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 3.339E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.775E-06 | 2.226E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 4.459E-06 | 2.146E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.449E-06 | 2.185E-03 |
|---|
| thymus development | GO:0048538 | | 5.449E-06 | 1.873E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 6.537E-06 | 1.966E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.039E-05 | 2.779E-03 |
|---|
| regulation of neuronal synaptic plasticity | GO:0048168 | | 1.692E-05 | 4.07E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 3.7E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.514E-07 | 2.08E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 3.57E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.922E-06 | 2.38E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.922E-06 | 1.785E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 4.695E-06 | 2.294E-03 |
|---|
| thymus development | GO:0048538 | | 5.737E-06 | 2.336E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 6.883E-06 | 2.402E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 9.487E-06 | 2.897E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.094E-05 | 2.971E-03 |
|---|
| regulation of neuronal synaptic plasticity | GO:0048168 | | 1.781E-05 | 4.351E-03 |
|---|
| visual learning | GO:0008542 | | 1.781E-05 | 3.955E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 1.838E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 3.339E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.775E-06 | 2.226E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 4.459E-06 | 2.146E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.449E-06 | 2.185E-03 |
|---|
| thymus development | GO:0048538 | | 5.449E-06 | 1.873E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 6.537E-06 | 1.966E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.039E-05 | 2.779E-03 |
|---|
| regulation of neuronal synaptic plasticity | GO:0048168 | | 1.692E-05 | 4.07E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 3.7E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 1.838E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 3.339E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.775E-06 | 2.226E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 4.459E-06 | 2.146E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 5.449E-06 | 2.185E-03 |
|---|
| thymus development | GO:0048538 | | 5.449E-06 | 1.873E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 6.537E-06 | 1.966E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 1.039E-05 | 2.779E-03 |
|---|
| regulation of neuronal synaptic plasticity | GO:0048168 | | 1.692E-05 | 4.07E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 3.7E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 4.412E-06 | 5.074E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 4.734E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 8.231E-06 | 4.733E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 8.231E-06 | 3.786E-03 |
|---|
| thymus development | GO:0048538 | | 1.058E-05 | 4.055E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.322E-05 | 4.344E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 1.615E-05 | 4.644E-03 |
|---|
| response to light stimulus | GO:0009416 | | 1.873E-05 | 4.786E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 2.117E-05 | 4.869E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 2.289E-05 | 4.787E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 4.412E-06 | 5.074E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 4.734E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 8.231E-06 | 4.733E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 8.231E-06 | 3.786E-03 |
|---|
| thymus development | GO:0048538 | | 1.058E-05 | 4.055E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.322E-05 | 4.344E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 1.615E-05 | 4.644E-03 |
|---|
| response to light stimulus | GO:0009416 | | 1.873E-05 | 4.786E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 2.117E-05 | 4.869E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 2.289E-05 | 4.787E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 4.412E-06 | 5.074E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 4.734E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 8.231E-06 | 4.733E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 8.231E-06 | 3.786E-03 |
|---|
| thymus development | GO:0048538 | | 1.058E-05 | 4.055E-03 |
|---|
| regulation of long-term neuronal synaptic plasticity | GO:0048169 | | 1.322E-05 | 4.344E-03 |
|---|
| T cell homeostasis | GO:0043029 | | 1.615E-05 | 4.644E-03 |
|---|
| response to light stimulus | GO:0009416 | | 1.873E-05 | 4.786E-03 |
|---|
| Ras protein signal transduction | GO:0007265 | | 2.117E-05 | 4.869E-03 |
|---|
| lymphocyte homeostasis | GO:0002260 | | 2.289E-05 | 4.787E-03 |
|---|
