Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 4172-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1533	1.409e-02	2.658e-02	5.593e-02
IPC-NIBC-129	0.1930	1.189e-01	7.620e-02	4.721e-01
Ivshina_GPL96-GPL97	0.2268	3.533e-02	2.422e-02	3.178e-01
Loi_GPL570	0.2031	6.436e-02	4.151e-02	2.805e-01
Loi_GPL96-GPL97	0.1888	2.552e-02	1.340e-03	2.988e-01
Pawitan_GPL96-GPL97	0.3578	1.607e-01	8.869e-02	6.400e-01
Schmidt	0.2309	3.536e-02	4.784e-02	1.931e-01
Sotiriou	0.2466	7.027e-02	5.082e-02	4.401e-01
Zhang	0.2087	4.060e-03	6.027e-03	1.868e-02

Expression data for subnetwork 4172-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 4172-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
mcm3		1	57	140	141	-0.020	0.173	0.113	0.084	0.110	0.255	0.171	0.156	-0.003
ccnb2		5	13	58	45	0.164	0.176	0.204	0.123	0.172	0.366	0.240	0.169	0.211
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
mcm2		2	35	90	82	0.151	0.254	0.188	0.128	0.154	0.267	0.224	0.200	0.012
cdc45l		2	35	113	108	-0.014	0.244	0.143	0.181	0.118	0.227	0.262	0.050	0.189
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 4172-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.878E-11	1.352E-07
DNA-dependent DNA replication	GO:0006261		3.961E-09	4.555E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
negative regulation of DNA replication initiation	GO:0032297		6.586E-06	3.787E-03
regulation of DNA replication initiation	GO:0030174		8.466E-06	3.894E-03
thymus development	GO:0048538		8.466E-06	3.245E-03
T cell homeostasis	GO:0043029		1.293E-05	4.247E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	5.268E-03
DNA unwinding during replication	GO:0006268		2.137E-05	5.461E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	6.478E-03
DNA duplex unwinding	GO:0032508		3.191E-05	6.673E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.739E-12	1.402E-08
DNA-dependent DNA replication	GO:0006261		8.495E-10	1.038E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.993E-06	1.623E-03
negative regulation of DNA replication initiation	GO:0032297		1.993E-06	1.217E-03
regulation of DNA replication initiation	GO:0030174		3.202E-06	1.564E-03
thymus development	GO:0048538		3.913E-06	1.593E-03
T cell homeostasis	GO:0043029		4.695E-06	1.638E-03
lymphocyte homeostasis	GO:0002260		7.466E-06	2.28E-03
DNA unwinding during replication	GO:0006268		9.667E-06	2.624E-03
DNA duplex unwinding	GO:0032508		1.35E-05	3.298E-03
cellular response to unfolded protein	GO:0034620		1.35E-05	2.998E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		6.68E-12	1.607E-08
DNA-dependent DNA replication	GO:0006261		7.743E-10	9.315E-07
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
negative regulation of DNA replication initiation	GO:0032297		2.221E-06	1.336E-03
regulation of DNA replication initiation	GO:0030174		3.568E-06	1.717E-03
thymus development	GO:0048538		4.36E-06	1.748E-03
T cell homeostasis	GO:0043029		5.231E-06	1.798E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	2.502E-03
DNA unwinding during replication	GO:0006268		1.077E-05	2.879E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	3.257E-03
DNA duplex unwinding	GO:0032508		1.504E-05	3.29E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.739E-12	1.402E-08
DNA-dependent DNA replication	GO:0006261		8.495E-10	1.038E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.993E-06	1.623E-03
negative regulation of DNA replication initiation	GO:0032297		1.993E-06	1.217E-03
regulation of DNA replication initiation	GO:0030174		3.202E-06	1.564E-03
thymus development	GO:0048538		3.913E-06	1.593E-03
T cell homeostasis	GO:0043029		4.695E-06	1.638E-03
lymphocyte homeostasis	GO:0002260		7.466E-06	2.28E-03
DNA unwinding during replication	GO:0006268		9.667E-06	2.624E-03
DNA duplex unwinding	GO:0032508		1.35E-05	3.298E-03
cellular response to unfolded protein	GO:0034620		1.35E-05	2.998E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		6.68E-12	1.607E-08
DNA-dependent DNA replication	GO:0006261		7.743E-10	9.315E-07
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
negative regulation of DNA replication initiation	GO:0032297		2.221E-06	1.336E-03
regulation of DNA replication initiation	GO:0030174		3.568E-06	1.717E-03
thymus development	GO:0048538		4.36E-06	1.748E-03
T cell homeostasis	GO:0043029		5.231E-06	1.798E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	2.502E-03
DNA unwinding during replication	GO:0006268		1.077E-05	2.879E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	3.257E-03
DNA duplex unwinding	GO:0032508		1.504E-05	3.29E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		6.68E-12	1.607E-08
DNA-dependent DNA replication	GO:0006261		7.743E-10	9.315E-07
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
negative regulation of DNA replication initiation	GO:0032297		2.221E-06	1.336E-03
regulation of DNA replication initiation	GO:0030174		3.568E-06	1.717E-03
thymus development	GO:0048538		4.36E-06	1.748E-03
T cell homeostasis	GO:0043029		5.231E-06	1.798E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	2.502E-03
DNA unwinding during replication	GO:0006268		1.077E-05	2.879E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	3.257E-03
DNA duplex unwinding	GO:0032508		1.504E-05	3.29E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.878E-11	1.352E-07
DNA-dependent DNA replication	GO:0006261		3.961E-09	4.555E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
negative regulation of DNA replication initiation	GO:0032297		6.586E-06	3.787E-03
regulation of DNA replication initiation	GO:0030174		8.466E-06	3.894E-03
thymus development	GO:0048538		8.466E-06	3.245E-03
T cell homeostasis	GO:0043029		1.293E-05	4.247E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	5.268E-03
DNA unwinding during replication	GO:0006268		2.137E-05	5.461E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	6.478E-03
DNA duplex unwinding	GO:0032508		3.191E-05	6.673E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.878E-11	1.352E-07
DNA-dependent DNA replication	GO:0006261		3.961E-09	4.555E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
negative regulation of DNA replication initiation	GO:0032297		6.586E-06	3.787E-03
regulation of DNA replication initiation	GO:0030174		8.466E-06	3.894E-03
thymus development	GO:0048538		8.466E-06	3.245E-03
T cell homeostasis	GO:0043029		1.293E-05	4.247E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	5.268E-03
DNA unwinding during replication	GO:0006268		2.137E-05	5.461E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	6.478E-03
DNA duplex unwinding	GO:0032508		3.191E-05	6.673E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.878E-11	1.352E-07
DNA-dependent DNA replication	GO:0006261		3.961E-09	4.555E-06
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
negative regulation of DNA replication initiation	GO:0032297		6.586E-06	3.787E-03
regulation of DNA replication initiation	GO:0030174		8.466E-06	3.894E-03
thymus development	GO:0048538		8.466E-06	3.245E-03
T cell homeostasis	GO:0043029		1.293E-05	4.247E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	5.268E-03
DNA unwinding during replication	GO:0006268		2.137E-05	5.461E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	6.478E-03
DNA duplex unwinding	GO:0032508		3.191E-05	6.673E-03