Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 3364-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1449	1.124e-02	2.173e-02	4.540e-02
IPC-NIBC-129	0.2237	1.144e-01	7.278e-02	4.572e-01
Ivshina_GPL96-GPL97	0.2376	1.904e-02	1.155e-02	1.857e-01
Loi_GPL570	0.2062	1.222e-01	9.775e-02	4.510e-01
Loi_GPL96-GPL97	0.1848	3.407e-02	2.967e-03	3.913e-01
Pawitan_GPL96-GPL97	0.3412	5.832e-02	2.202e-02	3.269e-01
Schmidt	0.1845	3.432e-02	4.650e-02	1.879e-01
Sotiriou	0.2484	7.516e-02	5.453e-02	4.615e-01
Zhang	0.3024	5.354e-03	7.957e-03	2.375e-02

Expression data for subnetwork 3364-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 3364-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
cdkn3		12	5	31	16	0.114	0.269	0.199	0.136	0.193	0.323	0.186	0.198	0.271
pold2		3	25	101	88	0.073	0.180	0.204	0.131	0.150	0.186	0.146	0.126	0.072
pcna		9	7	56	42	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.123
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
pole		1	57	101	106	0.073	0.135	0.081	-0.205	0.081	0.139	0.145	0.105	-0.014
hus1		1	57	101	106	-0.058	0.197	0.116	0.109	0.101	0.160	0.072	0.082	0.071
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 3364-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.232E-08	2.567E-05
nucleotide-excision repair	GO:0006289		4.878E-08	3.74E-05
interphase of mitotic cell cycle	GO:0051329		3.773E-07	2.169E-04
interphase	GO:0051325		4.14E-07	1.904E-04
response to UV	GO:0009411		4.787E-06	1.835E-03
regulation of DNA replication	GO:0006275		5.45E-06	1.791E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.553E-06	1.884E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	2.734E-03
DNA synthesis during DNA repair	GO:0000731		1.426E-05	3.279E-03
double-strand break repair via homologous recombination	GO:0000724		2.797E-05	5.848E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.725E-11	9.1E-08
G1/S transition of mitotic cell cycle	GO:0000082		3.315E-09	4.05E-06
nucleotide-excision repair	GO:0006289		8.003E-09	6.517E-06
interphase of mitotic cell cycle	GO:0051329		7.245E-08	4.425E-05
response to UV	GO:0009411		1.574E-06	7.692E-04
regulation of DNA replication	GO:0006275		1.663E-06	6.771E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.755E-06	6.124E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.419E-03
DNA synthesis during DNA repair	GO:0000731		5.974E-06	1.622E-03
regulation of DNA metabolic process	GO:0051052		8.753E-06	2.138E-03
double-strand break repair via homologous recombination	GO:0000724		1.293E-05	2.872E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.786E-11	9.109E-08
G1/S transition of mitotic cell cycle	GO:0000082		3.37E-09	4.055E-06
nucleotide-excision repair	GO:0006289		7.568E-09	6.069E-06
interphase of mitotic cell cycle	GO:0051329		6.498E-08	3.909E-05
interphase	GO:0051325		7.368E-08	3.546E-05
response to UV	GO:0009411		1.453E-06	5.829E-04
regulation of DNA replication	GO:0006275		1.719E-06	5.907E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	5.455E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
DNA synthesis during DNA repair	GO:0000731		6.181E-06	1.487E-03
regulation of DNA metabolic process	GO:0051052		9.048E-06	1.979E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.725E-11	9.1E-08
G1/S transition of mitotic cell cycle	GO:0000082		3.315E-09	4.05E-06
nucleotide-excision repair	GO:0006289		8.003E-09	6.517E-06
interphase of mitotic cell cycle	GO:0051329		7.245E-08	4.425E-05
response to UV	GO:0009411		1.574E-06	7.692E-04
regulation of DNA replication	GO:0006275		1.663E-06	6.771E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.755E-06	6.124E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.419E-03
DNA synthesis during DNA repair	GO:0000731		5.974E-06	1.622E-03
regulation of DNA metabolic process	GO:0051052		8.753E-06	2.138E-03
double-strand break repair via homologous recombination	GO:0000724		1.293E-05	2.872E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.786E-11	9.109E-08
G1/S transition of mitotic cell cycle	GO:0000082		3.37E-09	4.055E-06
nucleotide-excision repair	GO:0006289		7.568E-09	6.069E-06
interphase of mitotic cell cycle	GO:0051329		6.498E-08	3.909E-05
interphase	GO:0051325		7.368E-08	3.546E-05
response to UV	GO:0009411		1.453E-06	5.829E-04
regulation of DNA replication	GO:0006275		1.719E-06	5.907E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	5.455E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
DNA synthesis during DNA repair	GO:0000731		6.181E-06	1.487E-03
regulation of DNA metabolic process	GO:0051052		9.048E-06	1.979E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.786E-11	9.109E-08
G1/S transition of mitotic cell cycle	GO:0000082		3.37E-09	4.055E-06
nucleotide-excision repair	GO:0006289		7.568E-09	6.069E-06
interphase of mitotic cell cycle	GO:0051329		6.498E-08	3.909E-05
interphase	GO:0051325		7.368E-08	3.546E-05
response to UV	GO:0009411		1.453E-06	5.829E-04
regulation of DNA replication	GO:0006275		1.719E-06	5.907E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	5.455E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
DNA synthesis during DNA repair	GO:0000731		6.181E-06	1.487E-03
regulation of DNA metabolic process	GO:0051052		9.048E-06	1.979E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.232E-08	2.567E-05
nucleotide-excision repair	GO:0006289		4.878E-08	3.74E-05
interphase of mitotic cell cycle	GO:0051329		3.773E-07	2.169E-04
interphase	GO:0051325		4.14E-07	1.904E-04
response to UV	GO:0009411		4.787E-06	1.835E-03
regulation of DNA replication	GO:0006275		5.45E-06	1.791E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.553E-06	1.884E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	2.734E-03
DNA synthesis during DNA repair	GO:0000731		1.426E-05	3.279E-03
double-strand break repair via homologous recombination	GO:0000724		2.797E-05	5.848E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.232E-08	2.567E-05
nucleotide-excision repair	GO:0006289		4.878E-08	3.74E-05
interphase of mitotic cell cycle	GO:0051329		3.773E-07	2.169E-04
interphase	GO:0051325		4.14E-07	1.904E-04
response to UV	GO:0009411		4.787E-06	1.835E-03
regulation of DNA replication	GO:0006275		5.45E-06	1.791E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.553E-06	1.884E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	2.734E-03
DNA synthesis during DNA repair	GO:0000731		1.426E-05	3.279E-03
double-strand break repair via homologous recombination	GO:0000724		2.797E-05	5.848E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.232E-08	2.567E-05
nucleotide-excision repair	GO:0006289		4.878E-08	3.74E-05
interphase of mitotic cell cycle	GO:0051329		3.773E-07	2.169E-04
interphase	GO:0051325		4.14E-07	1.904E-04
response to UV	GO:0009411		4.787E-06	1.835E-03
regulation of DNA replication	GO:0006275		5.45E-06	1.791E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.553E-06	1.884E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	2.734E-03
DNA synthesis during DNA repair	GO:0000731		1.426E-05	3.279E-03
double-strand break repair via homologous recombination	GO:0000724		2.797E-05	5.848E-03