Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3301-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1544 | 1.328e-02 | 2.523e-02 | 5.300e-02 |
|---|
| IPC-NIBC-129 | 0.1960 | 5.873e-02 | 3.270e-02 | 2.407e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2296 | 3.326e-02 | 2.253e-02 | 3.026e-01 |
|---|
| Loi_GPL570 | 0.2600 | 1.306e-01 | 1.068e-01 | 4.720e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1981 | 2.457e-02 | 1.206e-03 | 2.877e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3310 | 7.630e-02 | 3.189e-02 | 3.991e-01 |
|---|
| Schmidt | 0.1796 | 1.766e-02 | 2.452e-02 | 9.933e-02 |
|---|
| Sotiriou | 0.2905 | 6.004e-02 | 4.310e-02 | 3.921e-01 |
|---|
| Zhang | 0.2779 | 6.349e-03 | 9.439e-03 | 2.752e-02 |
|---|
Expression data for subnetwork 3301-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3301-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| tsc1 |   | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| dnaja1 | | 1 | 57 | 64 | 66 | 0.008 | 0.167 | 0.107 | 0.130 | 0.105 | 0.142 | 0.045 | 0.071 | 0.031 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| pttg1 | | 1 | 57 | 64 | 66 | 0.072 | 0.270 | 0.175 | 0.183 | 0.200 | 0.334 | 0.224 | 0.204 | 0.210 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 3301-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 3.109E-06 | 2.383E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.21E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 1.768E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 4.353E-06 | 1.669E-03 |
|---|
| regulation of GTPase activity | GO:0043087 | | 5.083E-06 | 1.67E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.473E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 5.277E-06 | 1.349E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.515E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 1.377E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.697E-07 | 1.392E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.544E-07 | 1.044E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.304E-06 | 1.062E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 1.585E-06 | 9.68E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.595E-06 | 7.791E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.595E-06 | 6.492E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.05E-06 | 7.154E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.562E-06 | 7.824E-04 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.562E-06 | 6.954E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.131E-06 | 7.649E-04 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 3.131E-06 | 6.953E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.8E-06 | 1.444E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.212E-06 | 1.331E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.069E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 8.905E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 9.812E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 9.538E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 8.584E-04 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 9.536E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.697E-07 | 1.392E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.544E-07 | 1.044E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.304E-06 | 1.062E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 1.585E-06 | 9.68E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.595E-06 | 7.791E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.595E-06 | 6.492E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.05E-06 | 7.154E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.562E-06 | 7.824E-04 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.562E-06 | 6.954E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.131E-06 | 7.649E-04 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 3.131E-06 | 6.953E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.8E-06 | 1.444E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.212E-06 | 1.331E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.069E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 8.905E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 9.812E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 9.538E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 8.584E-04 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 9.536E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.8E-06 | 1.444E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.212E-06 | 1.331E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.069E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 8.905E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 9.812E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 9.538E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 8.584E-04 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 9.536E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 3.109E-06 | 2.383E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.21E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 1.768E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 4.353E-06 | 1.669E-03 |
|---|
| regulation of GTPase activity | GO:0043087 | | 5.083E-06 | 1.67E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.473E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 5.277E-06 | 1.349E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.515E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 1.377E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 3.109E-06 | 2.383E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.21E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 1.768E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 4.353E-06 | 1.669E-03 |
|---|
| regulation of GTPase activity | GO:0043087 | | 5.083E-06 | 1.67E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.473E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 5.277E-06 | 1.349E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.515E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 3.109E-06 | 2.383E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.21E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 1.768E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 4.353E-06 | 1.669E-03 |
|---|
| regulation of GTPase activity | GO:0043087 | | 5.083E-06 | 1.67E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.473E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 5.277E-06 | 1.349E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.515E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 1.377E-03 |
|---|
