Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3066-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1670 | 1.865e-02 | 3.413e-02 | 7.224e-02 |
|---|
| IPC-NIBC-129 | 0.2082 | 8.092e-02 | 4.802e-02 | 3.335e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2133 | 2.602e-02 | 1.680e-02 | 2.460e-01 |
|---|
| Loi_GPL570 | 0.2343 | 6.268e-02 | 4.005e-02 | 2.747e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1774 | 1.576e-02 | 3.430e-04 | 1.784e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3209 | 9.877e-02 | 4.548e-02 | 4.769e-01 |
|---|
| Schmidt | 0.2328 | 1.915e-02 | 2.652e-02 | 1.077e-01 |
|---|
| Sotiriou | 0.2854 | 8.496e-02 | 6.201e-02 | 5.018e-01 |
|---|
| Zhang | 0.2541 | 7.511e-03 | 1.117e-02 | 3.180e-02 |
|---|
Expression data for subnetwork 3066-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3066-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| sp1 |   | 14 | 4 | 11 | 6 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.091 |
|---|
| mybl2 | | 9 | 7 | 29 | 13 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.275 | 0.202 | 0.182 | 0.074 |
|---|
| hdac2 | | 1 | 57 | 87 | 89 | 0.012 | 0.245 | 0.030 | 0.077 | 0.070 | 0.183 | 0.222 | -0.058 | 0.133 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 3066-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 |  | 1.324E-06 | 3.046E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 5.682E-03 |
|---|
| histone deacetylation | GO:0016575 | | 1.293E-05 | 9.911E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 2.465E-05 | 0.01417505 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 2.817E-05 | 0.01295659 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 0.01079716 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 3.589E-05 | 0.01179345 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01415236 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01514766 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01486828 |
|---|
| regulation of chromosome organization | GO:0033044 | | 7.025E-05 | 0.01468805 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.93E-07 | 4.716E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.697E-07 | 6.959E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 8.544E-07 | 6.958E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.595E-06 | 9.738E-04 |
|---|
| histone deacetylation | GO:0016575 | | 5.974E-06 | 2.919E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 7.736E-06 | 3.15E-03 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.08E-05 | 3.77E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.08E-05 | 3.299E-03 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.313E-05 | 3.564E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.846E-05 | 4.511E-03 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 1.846E-05 | 4.101E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.17E-07 | 7.627E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 7.935E-07 | 9.545E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.19E-06 | 9.544E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.336E-03 |
|---|
| histone deacetylation | GO:0016575 | | 8.318E-06 | 4.003E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.077E-05 | 4.319E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.354E-05 | 4.653E-03 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.504E-05 | 4.523E-03 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.828E-05 | 4.887E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.373E-05 | 5.709E-03 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.57E-05 | 5.622E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.93E-07 | 4.716E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.697E-07 | 6.959E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 8.544E-07 | 6.958E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.595E-06 | 9.738E-04 |
|---|
| histone deacetylation | GO:0016575 | | 5.974E-06 | 2.919E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 7.736E-06 | 3.15E-03 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.08E-05 | 3.77E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.08E-05 | 3.299E-03 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.313E-05 | 3.564E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.846E-05 | 4.511E-03 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 1.846E-05 | 4.101E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.17E-07 | 7.627E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 7.935E-07 | 9.545E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.19E-06 | 9.544E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.336E-03 |
|---|
| histone deacetylation | GO:0016575 | | 8.318E-06 | 4.003E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.077E-05 | 4.319E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.354E-05 | 4.653E-03 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.504E-05 | 4.523E-03 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.828E-05 | 4.887E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.373E-05 | 5.709E-03 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.57E-05 | 5.622E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.17E-07 | 7.627E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 7.935E-07 | 9.545E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.19E-06 | 9.544E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.336E-03 |
|---|
| histone deacetylation | GO:0016575 | | 8.318E-06 | 4.003E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.077E-05 | 4.319E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.354E-05 | 4.653E-03 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.504E-05 | 4.523E-03 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.828E-05 | 4.887E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.373E-05 | 5.709E-03 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.57E-05 | 5.622E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.324E-06 | 3.046E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 5.682E-03 |
|---|
| histone deacetylation | GO:0016575 | | 1.293E-05 | 9.911E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 2.465E-05 | 0.01417505 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 2.817E-05 | 0.01295659 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 0.01079716 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 3.589E-05 | 0.01179345 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01415236 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01514766 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01486828 |
|---|
| regulation of chromosome organization | GO:0033044 | | 7.025E-05 | 0.01468805 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.324E-06 | 3.046E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 5.682E-03 |
|---|
| histone deacetylation | GO:0016575 | | 1.293E-05 | 9.911E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 2.465E-05 | 0.01417505 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 2.817E-05 | 0.01295659 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 0.01079716 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 3.589E-05 | 0.01179345 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01415236 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01514766 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01486828 |
|---|
| regulation of chromosome organization | GO:0033044 | | 7.025E-05 | 0.01468805 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.324E-06 | 3.046E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 5.682E-03 |
|---|
| histone deacetylation | GO:0016575 | | 1.293E-05 | 9.911E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 2.465E-05 | 0.01417505 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 2.817E-05 | 0.01295659 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 0.01079716 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 3.589E-05 | 0.01179345 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01415236 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01514766 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01486828 |
|---|
| regulation of chromosome organization | GO:0033044 | | 7.025E-05 | 0.01468805 |
|---|
