Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 292-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1972 | 1.103e-02 | 2.137e-02 | 4.463e-02 |
|---|
| IPC-NIBC-129 | 0.2048 | 4.581e-02 | 2.428e-02 | 1.833e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2385 | 2.789e-02 | 1.825e-02 | 2.611e-01 |
|---|
| Loi_GPL570 | 0.2798 | 6.840e-02 | 4.507e-02 | 2.942e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1647 | 5.296e-03 | 1.400e-05 | 4.280e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3150 | 1.409e-01 | 7.410e-02 | 5.947e-01 |
|---|
| Schmidt | 0.2265 | 7.885e-03 | 1.123e-02 | 4.283e-02 |
|---|
| Sotiriou | 0.3410 | 1.050e-01 | 7.747e-02 | 5.740e-01 |
|---|
| Zhang | 0.2210 | 8.284e-03 | 1.231e-02 | 3.459e-02 |
|---|
Expression data for subnetwork 292-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 292-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| sp1 |   | 14 | 4 | 11 | 6 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.091 |
|---|
| tsc1 | | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| mybl2 | | 9 | 7 | 29 | 13 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.275 | 0.202 | 0.182 | 0.074 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| slc25a5 | | 5 | 13 | 29 | 20 | 0.053 | 0.214 | 0.106 | 0.218 | 0.115 | 0.221 | 0.177 | 0.141 | -0.019 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 292-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 |  | 1.889E-06 | 4.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| plasminogen activation | GO:0031639 | | 2.942E-06 | 1.692E-03 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 4.412E-06 | 2.03E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.367E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.029E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.366E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 8.231E-06 | 2.103E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.212E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.785E-07 | 9.246E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 1.063E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 8.703E-07 | 7.087E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.305E-06 | 7.971E-04 |
|---|
| plasminogen activation | GO:0031639 | | 1.305E-06 | 6.377E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 5.314E-04 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 1.827E-06 | 6.376E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 7.437E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 7.649E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 8.69E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.213E-07 | 1.495E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 1.212E-06 | 9.721E-04 |
|---|
| plasminogen activation | GO:0031639 | | 1.212E-06 | 7.291E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 5.832E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.818E-06 | 7.289E-04 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 1.818E-06 | 6.248E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.02E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.049E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 4.36E-06 | 9.536E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.785E-07 | 9.246E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 1.063E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 8.703E-07 | 7.087E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.305E-06 | 7.971E-04 |
|---|
| plasminogen activation | GO:0031639 | | 1.305E-06 | 6.377E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 5.314E-04 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 1.827E-06 | 6.376E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 7.437E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 7.649E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 8.69E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.213E-07 | 1.495E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 1.212E-06 | 9.721E-04 |
|---|
| plasminogen activation | GO:0031639 | | 1.212E-06 | 7.291E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 5.832E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.818E-06 | 7.289E-04 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 1.818E-06 | 6.248E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.02E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.049E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 4.36E-06 | 9.536E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.213E-07 | 1.495E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 1.212E-06 | 9.721E-04 |
|---|
| plasminogen activation | GO:0031639 | | 1.212E-06 | 7.291E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 5.832E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 1.818E-06 | 7.289E-04 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 1.818E-06 | 6.248E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.02E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.049E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 4.36E-06 | 9.536E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.889E-06 | 4.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| plasminogen activation | GO:0031639 | | 2.942E-06 | 1.692E-03 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 4.412E-06 | 2.03E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.367E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.029E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.366E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 8.231E-06 | 2.103E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.212E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.889E-06 | 4.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| plasminogen activation | GO:0031639 | | 2.942E-06 | 1.692E-03 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 4.412E-06 | 2.03E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.367E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.029E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.366E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 8.231E-06 | 2.103E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.212E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.889E-06 | 4.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| plasminogen activation | GO:0031639 | | 2.942E-06 | 1.692E-03 |
|---|
| positive regulation of fibrinolysis | GO:0051919 | | 4.412E-06 | 2.03E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.367E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.029E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.366E-03 |
|---|
| regulation of fibrinolysis | GO:0051917 | | 8.231E-06 | 2.103E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.212E-03 |
|---|
