Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 27301-3-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2129	1.687e-02	3.122e-02	6.596e-02
IPC-NIBC-129	0.2002	6.541e-02	3.721e-02	2.695e-01
Ivshina_GPL96-GPL97	0.2181	3.059e-02	2.039e-02	2.824e-01
Loi_GPL570	0.2514	1.484e-01	1.261e-01	5.134e-01
Loi_GPL96-GPL97	0.1806	2.964e-03	2.000e-06	1.777e-02
Pawitan_GPL96-GPL97	0.3101	9.298e-02	4.186e-02	4.580e-01
Schmidt	0.1702	2.039e-02	2.816e-02	1.145e-01
Sotiriou	0.2815	8.057e-02	5.865e-02	4.841e-01
Zhang	0.2597	8.986e-03	1.336e-02	3.708e-02

Expression data for subnetwork 27301-3-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 27301-3-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
sp1		14	4	11	6	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.091
pcna		9	7	56	42	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.123
apex2		1	57	94	97	0.176	0.037	0.097	0.037	0.111	0.168	0.077	0.088	-0.014
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
hif1a		2	35	22	22	0.097	0.246	0.089	-0.009	0.101	0.011	-0.043	0.119	0.129
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 27301-3-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		1.889E-06	4.344E-03
regulation of hormone biosynthetic process	GO:0046885		2.942E-06	3.384E-03
embryonic hemopoiesis	GO:0035162		2.942E-06	2.256E-03
positive regulation of glycolysis	GO:0045821		2.942E-06	1.692E-03
positive regulation of chemokine production	GO:0032722		2.942E-06	1.353E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		4.412E-06	1.691E-03
gas homeostasis	GO:0033483		4.412E-06	1.45E-03
positive regulation of vascular endothelial growth factor receptor signaling pathway	GO:0030949		4.412E-06	1.268E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.578E-03
hemoglobin metabolic process	GO:0020027		6.175E-06	1.42E-03
positive regulation of monooxygenase activity	GO:0032770		6.175E-06	1.291E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		3.785E-07	9.246E-04
hemoglobin biosynthetic process	GO:0042541		8.703E-07	1.063E-03
positive regulation of glycolysis	GO:0045821		8.703E-07	7.087E-04
mRNA transcription	GO:0009299		8.703E-07	5.315E-04
meiotic chromosome segregation	GO:0045132		8.703E-07	4.252E-04
positive regulation of chemokine production	GO:0032722		8.703E-07	3.543E-04
regulation of hormone biosynthetic process	GO:0046885		1.305E-06	4.555E-04
embryonic hemopoiesis	GO:0035162		1.305E-06	3.986E-04
positive regulation of nitric-oxide synthase activity	GO:0051000		1.305E-06	3.543E-04
establishment of spindle localization	GO:0051293		1.305E-06	3.189E-04
oxygen homeostasis	GO:0032364		1.305E-06	2.899E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		6.213E-07	1.495E-03
hemoglobin biosynthetic process	GO:0042541		1.212E-06	1.458E-03
positive regulation of glycolysis	GO:0045821		1.212E-06	9.721E-04
mRNA transcription	GO:0009299		1.212E-06	7.291E-04
meiotic chromosome segregation	GO:0045132		1.212E-06	5.832E-04
positive regulation of chemokine production	GO:0032722		1.212E-06	4.86E-04
regulation of hormone biosynthetic process	GO:0046885		1.818E-06	6.248E-04
embryonic hemopoiesis	GO:0035162		1.818E-06	5.467E-04
positive regulation of nitric-oxide synthase activity	GO:0051000		1.818E-06	4.859E-04
establishment of spindle localization	GO:0051293		1.818E-06	4.373E-04
positive regulation of monooxygenase activity	GO:0032770		2.544E-06	5.565E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		3.785E-07	9.246E-04
hemoglobin biosynthetic process	GO:0042541		8.703E-07	1.063E-03
positive regulation of glycolysis	GO:0045821		8.703E-07	7.087E-04
mRNA transcription	GO:0009299		8.703E-07	5.315E-04
meiotic chromosome segregation	GO:0045132		8.703E-07	4.252E-04
positive regulation of chemokine production	GO:0032722		8.703E-07	3.543E-04
regulation of hormone biosynthetic process	GO:0046885		1.305E-06	4.555E-04
embryonic hemopoiesis	GO:0035162		1.305E-06	3.986E-04
positive regulation of nitric-oxide synthase activity	GO:0051000		1.305E-06	3.543E-04
establishment of spindle localization	GO:0051293		1.305E-06	3.189E-04
oxygen homeostasis	GO:0032364		1.305E-06	2.899E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		6.213E-07	1.495E-03
hemoglobin biosynthetic process	GO:0042541		1.212E-06	1.458E-03
positive regulation of glycolysis	GO:0045821		1.212E-06	9.721E-04
mRNA transcription	GO:0009299		1.212E-06	7.291E-04
meiotic chromosome segregation	GO:0045132		1.212E-06	5.832E-04
positive regulation of chemokine production	GO:0032722		1.212E-06	4.86E-04
regulation of hormone biosynthetic process	GO:0046885		1.818E-06	6.248E-04
embryonic hemopoiesis	GO:0035162		1.818E-06	5.467E-04
positive regulation of nitric-oxide synthase activity	GO:0051000		1.818E-06	4.859E-04
establishment of spindle localization	GO:0051293		1.818E-06	4.373E-04
positive regulation of monooxygenase activity	GO:0032770		2.544E-06	5.565E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		6.213E-07	1.495E-03
hemoglobin biosynthetic process	GO:0042541		1.212E-06	1.458E-03
positive regulation of glycolysis	GO:0045821		1.212E-06	9.721E-04
mRNA transcription	GO:0009299		1.212E-06	7.291E-04
meiotic chromosome segregation	GO:0045132		1.212E-06	5.832E-04
positive regulation of chemokine production	GO:0032722		1.212E-06	4.86E-04
regulation of hormone biosynthetic process	GO:0046885		1.818E-06	6.248E-04
embryonic hemopoiesis	GO:0035162		1.818E-06	5.467E-04
positive regulation of nitric-oxide synthase activity	GO:0051000		1.818E-06	4.859E-04
establishment of spindle localization	GO:0051293		1.818E-06	4.373E-04
positive regulation of monooxygenase activity	GO:0032770		2.544E-06	5.565E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		1.889E-06	4.344E-03
regulation of hormone biosynthetic process	GO:0046885		2.942E-06	3.384E-03
embryonic hemopoiesis	GO:0035162		2.942E-06	2.256E-03
positive regulation of glycolysis	GO:0045821		2.942E-06	1.692E-03
positive regulation of chemokine production	GO:0032722		2.942E-06	1.353E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		4.412E-06	1.691E-03
gas homeostasis	GO:0033483		4.412E-06	1.45E-03
positive regulation of vascular endothelial growth factor receptor signaling pathway	GO:0030949		4.412E-06	1.268E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.578E-03
hemoglobin metabolic process	GO:0020027		6.175E-06	1.42E-03
positive regulation of monooxygenase activity	GO:0032770		6.175E-06	1.291E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		1.889E-06	4.344E-03
regulation of hormone biosynthetic process	GO:0046885		2.942E-06	3.384E-03
embryonic hemopoiesis	GO:0035162		2.942E-06	2.256E-03
positive regulation of glycolysis	GO:0045821		2.942E-06	1.692E-03
positive regulation of chemokine production	GO:0032722		2.942E-06	1.353E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		4.412E-06	1.691E-03
gas homeostasis	GO:0033483		4.412E-06	1.45E-03
positive regulation of vascular endothelial growth factor receptor signaling pathway	GO:0030949		4.412E-06	1.268E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.578E-03
hemoglobin metabolic process	GO:0020027		6.175E-06	1.42E-03
positive regulation of monooxygenase activity	GO:0032770		6.175E-06	1.291E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell cycle	GO:0045787		1.889E-06	4.344E-03
regulation of hormone biosynthetic process	GO:0046885		2.942E-06	3.384E-03
embryonic hemopoiesis	GO:0035162		2.942E-06	2.256E-03
positive regulation of glycolysis	GO:0045821		2.942E-06	1.692E-03
positive regulation of chemokine production	GO:0032722		2.942E-06	1.353E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		4.412E-06	1.691E-03
gas homeostasis	GO:0033483		4.412E-06	1.45E-03
positive regulation of vascular endothelial growth factor receptor signaling pathway	GO:0030949		4.412E-06	1.268E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.578E-03
hemoglobin metabolic process	GO:0020027		6.175E-06	1.42E-03
positive regulation of monooxygenase activity	GO:0032770		6.175E-06	1.291E-03