Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2596-3-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1721	1.117e-02	2.162e-02	4.516e-02
IPC-NIBC-129	0.2033	7.883e-02	4.654e-02	3.251e-01
Ivshina_GPL96-GPL97	0.2379	2.874e-02	1.893e-02	2.679e-01
Loi_GPL570	0.2364	1.363e-01	1.128e-01	4.855e-01
Loi_GPL96-GPL97	0.1932	1.315e-02	2.030e-04	1.440e-01
Pawitan_GPL96-GPL97	0.2815	6.430e-02	2.520e-02	3.521e-01
Schmidt	0.1765	1.158e-02	1.631e-02	6.448e-02
Sotiriou	0.3170	6.517e-02	4.696e-02	4.168e-01
Zhang	0.2935	1.444e-02	2.141e-02	5.545e-02

Expression data for subnetwork 2596-3-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 2596-3-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
calm1		4	19	41	35	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.162
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
gap43		1	57	67	70	0.087	0.151	0.091	-0.117	0.079	0.077	-0.087	0.073	0.064
hmmr		4	19	41	35	0.112	0.310	0.147	0.127	0.145	0.221	0.179	0.233	0.144
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 2596-3-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
tissue regeneration	GO:0042246		4.622E-05	0.05315201
neuron recognition	GO:0008038		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
regeneration	GO:0031099		1.01E-04	0.04648241
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.04752619
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.04903317
fat cell differentiation	GO:0045444		1.627E-04	0.04678297
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.914E-04	0.04892289
glial cell differentiation	GO:0010001		2.733E-04	0.06285366
gliogenesis	GO:0042063		4.118E-04	0.08610914

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
neuron recognition	GO:0008038		2.894E-05	0.03535501
tissue regeneration	GO:0042246		2.894E-05	0.02357001
cellular response to unfolded protein	GO:0034620		4.577E-05	0.02795581
regeneration	GO:0031099		6.09E-05	0.02975349
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.03182209
fat cell differentiation	GO:0045444		9.085E-05	0.03170514
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.02978802
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.045E-04	0.02836103
glial cell differentiation	GO:0010001		1.346E-04	0.03287888
gliogenesis	GO:0042063		1.963E-04	0.04359767

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
tissue regeneration	GO:0042246		2.767E-05	0.0332895
neuron recognition	GO:0008038		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
regeneration	GO:0031099		6.075E-05	0.02923128
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03160619
fat cell differentiation	GO:0045444		9.216E-05	0.03167685
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.02984009
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.141E-04	0.03050535
glial cell differentiation	GO:0010001		1.47E-04	0.03536339
gliogenesis	GO:0042063		2.144E-04	0.04688893

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
neuron recognition	GO:0008038		2.894E-05	0.03535501
tissue regeneration	GO:0042246		2.894E-05	0.02357001
cellular response to unfolded protein	GO:0034620		4.577E-05	0.02795581
regeneration	GO:0031099		6.09E-05	0.02975349
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.03182209
fat cell differentiation	GO:0045444		9.085E-05	0.03170514
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.02978802
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.045E-04	0.02836103
glial cell differentiation	GO:0010001		1.346E-04	0.03287888
gliogenesis	GO:0042063		1.963E-04	0.04359767

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
tissue regeneration	GO:0042246		2.767E-05	0.0332895
neuron recognition	GO:0008038		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
regeneration	GO:0031099		6.075E-05	0.02923128
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03160619
fat cell differentiation	GO:0045444		9.216E-05	0.03167685
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.02984009
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.141E-04	0.03050535
glial cell differentiation	GO:0010001		1.47E-04	0.03536339
gliogenesis	GO:0042063		2.144E-04	0.04688893

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
tissue regeneration	GO:0042246		2.767E-05	0.0332895
neuron recognition	GO:0008038		3.162E-05	0.02535557
cellular response to unfolded protein	GO:0034620		4.501E-05	0.02707358
regeneration	GO:0031099		6.075E-05	0.02923128
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.03160619
fat cell differentiation	GO:0045444		9.216E-05	0.03167685
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.02984009
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.141E-04	0.03050535
glial cell differentiation	GO:0010001		1.47E-04	0.03536339
gliogenesis	GO:0042063		2.144E-04	0.04688893

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
tissue regeneration	GO:0042246		4.622E-05	0.05315201
neuron recognition	GO:0008038		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
regeneration	GO:0031099		1.01E-04	0.04648241
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.04752619
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.04903317
fat cell differentiation	GO:0045444		1.627E-04	0.04678297
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.914E-04	0.04892289
glial cell differentiation	GO:0010001		2.733E-04	0.06285366
gliogenesis	GO:0042063		4.118E-04	0.08610914

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
tissue regeneration	GO:0042246		4.622E-05	0.05315201
neuron recognition	GO:0008038		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
regeneration	GO:0031099		1.01E-04	0.04648241
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.04752619
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.04903317
fat cell differentiation	GO:0045444		1.627E-04	0.04678297
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.914E-04	0.04892289
glial cell differentiation	GO:0010001		2.733E-04	0.06285366
gliogenesis	GO:0042063		4.118E-04	0.08610914

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
tissue regeneration	GO:0042246		4.622E-05	0.05315201
neuron recognition	GO:0008038		6.216E-05	0.04765688
cellular response to unfolded protein	GO:0034620		7.101E-05	0.04083006
regeneration	GO:0031099		1.01E-04	0.04648241
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.04752619
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.04903317
fat cell differentiation	GO:0045444		1.627E-04	0.04678297
activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205		1.914E-04	0.04892289
glial cell differentiation	GO:0010001		2.733E-04	0.06285366
gliogenesis	GO:0042063		4.118E-04	0.08610914