Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2305-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1350	2.383e-02	4.242e-02	8.999e-02
IPC-NIBC-129	0.1783	7.195e-02	4.172e-02	2.970e-01
Ivshina_GPL96-GPL97	0.2014	4.731e-02	3.430e-02	3.983e-01
Loi_GPL570	0.2437	1.487e-01	1.264e-01	5.141e-01
Loi_GPL96-GPL97	0.2319	4.773e-02	7.309e-03	5.143e-01
Pawitan_GPL96-GPL97	0.3440	8.729e-02	3.837e-02	4.386e-01
Schmidt	0.1701	2.013e-02	2.781e-02	1.131e-01
Sotiriou	0.2823	3.374e-02	2.365e-02	2.451e-01
Zhang	0.2655	5.114e-03	7.600e-03	2.283e-02

Expression data for subnetwork 2305-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 2305-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
foxm1		1	57	110	115	0.059	0.185	0.091	0.181	0.128	0.231	0.223	0.140	0.176
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
ccnb1		25	3	46	33	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.167
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 2305-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.401E-06	3.222E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.472E-06	1.693E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.699E-06	1.303E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.699E-06	9.769E-04
positive regulation of ligase activity	GO:0051351		2.036E-06	9.368E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		2.221E-06	8.513E-04
regulation of ligase activity	GO:0051340		2.622E-06	8.615E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	8.29E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	8.146E-04
interphase of mitotic cell cycle	GO:0051329		3.966E-06	9.122E-04
interphase	GO:0051325		4.251E-06	8.889E-04

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		3.725E-07	9.099E-04
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.893E-07	4.756E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		4.43E-07	3.608E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		4.43E-07	2.706E-04
positive regulation of ligase activity	GO:0051351		5.431E-07	2.654E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		5.87E-07	2.39E-04
regulation of ligase activity	GO:0051340		7.069E-07	2.467E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		9.619E-07	2.937E-04
interphase of mitotic cell cycle	GO:0051329		1.127E-06	3.059E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.24E-06	3.03E-04
cellular response to unfolded protein	GO:0034620		8.405E-06	1.867E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.115E-07	1.471E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.392E-07	7.69E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.274E-07	5.833E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.274E-07	4.375E-04
positive regulation of ligase activity	GO:0051351		8.916E-07	4.29E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		9.636E-07	3.864E-04
regulation of ligase activity	GO:0051340		1.16E-06	3.988E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.747E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.5E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	4.156E-04
interphase	GO:0051325		1.849E-06	4.044E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		3.725E-07	9.099E-04
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.893E-07	4.756E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		4.43E-07	3.608E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		4.43E-07	2.706E-04
positive regulation of ligase activity	GO:0051351		5.431E-07	2.654E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		5.87E-07	2.39E-04
regulation of ligase activity	GO:0051340		7.069E-07	2.467E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		9.619E-07	2.937E-04
interphase of mitotic cell cycle	GO:0051329		1.127E-06	3.059E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.24E-06	3.03E-04
cellular response to unfolded protein	GO:0034620		8.405E-06	1.867E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.115E-07	1.471E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.392E-07	7.69E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.274E-07	5.833E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.274E-07	4.375E-04
positive regulation of ligase activity	GO:0051351		8.916E-07	4.29E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		9.636E-07	3.864E-04
regulation of ligase activity	GO:0051340		1.16E-06	3.988E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.747E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.5E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	4.156E-04
interphase	GO:0051325		1.849E-06	4.044E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.115E-07	1.471E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.392E-07	7.69E-04
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.274E-07	5.833E-04
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.274E-07	4.375E-04
positive regulation of ligase activity	GO:0051351		8.916E-07	4.29E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		9.636E-07	3.864E-04
regulation of ligase activity	GO:0051340		1.16E-06	3.988E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.747E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.5E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	4.156E-04
interphase	GO:0051325		1.849E-06	4.044E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.401E-06	3.222E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.472E-06	1.693E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.699E-06	1.303E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.699E-06	9.769E-04
positive regulation of ligase activity	GO:0051351		2.036E-06	9.368E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		2.221E-06	8.513E-04
regulation of ligase activity	GO:0051340		2.622E-06	8.615E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	8.29E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	8.146E-04
interphase of mitotic cell cycle	GO:0051329		3.966E-06	9.122E-04
interphase	GO:0051325		4.251E-06	8.889E-04

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.401E-06	3.222E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.472E-06	1.693E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.699E-06	1.303E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.699E-06	9.769E-04
positive regulation of ligase activity	GO:0051351		2.036E-06	9.368E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		2.221E-06	8.513E-04
regulation of ligase activity	GO:0051340		2.622E-06	8.615E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	8.29E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	8.146E-04
interphase of mitotic cell cycle	GO:0051329		3.966E-06	9.122E-04
interphase	GO:0051325		4.251E-06	8.889E-04

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.401E-06	3.222E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.472E-06	1.693E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.699E-06	1.303E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.699E-06	9.769E-04
positive regulation of ligase activity	GO:0051351		2.036E-06	9.368E-04
regulation of ubiquitin-protein ligase activity	GO:0051438		2.221E-06	8.513E-04
regulation of ligase activity	GO:0051340		2.622E-06	8.615E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	8.29E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		3.187E-06	8.146E-04
interphase of mitotic cell cycle	GO:0051329		3.966E-06	9.122E-04
interphase	GO:0051325		4.251E-06	8.889E-04