Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2178-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1596	1.237e-02	2.368e-02	4.963e-02
IPC-NIBC-129	0.2001	9.082e-02	5.516e-02	3.721e-01
Ivshina_GPL96-GPL97	0.2330	3.062e-02	2.041e-02	2.826e-01
Loi_GPL570	0.2250	9.026e-02	6.542e-02	3.633e-01
Loi_GPL96-GPL97	0.1867	2.045e-02	7.200e-04	2.380e-01
Pawitan_GPL96-GPL97	0.3472	5.044e-02	1.803e-02	2.920e-01
Schmidt	0.2066	2.337e-02	3.213e-02	1.309e-01
Sotiriou	0.2729	7.275e-02	5.270e-02	4.511e-01
Zhang	0.3155	4.843e-03	7.196e-03	2.178e-02

Expression data for subnetwork 2178-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 2178-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
cdkn3		12	5	31	16	0.114	0.269	0.199	0.136	0.193	0.323	0.186	0.198	0.271
fance		1	57	50	55	-0.019	0.105	0.076	0.206	0.079	0.135	0.209	0.052	0.104
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
fancg		3	25	31	30	0.081	0.214	0.140	0.118	0.100	0.215	0.173	0.118	0.070
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 2178-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		3.513E-08	8.079E-05
response to endoplasmic reticulum stress	GO:0034976		8.333E-08	9.583E-05
ER-nuclear signaling pathway	GO:0006984		1.109E-07	8.504E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.696E-07	4.425E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.296E-06	5.964E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.473E-03
response to unfolded protein	GO:0006986		4.353E-06	1.43E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.461E-03
response to protein stimulus	GO:0051789		5.277E-06	1.349E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		1.277E-08	3.119E-05
response to endoplasmic reticulum stress	GO:0034976		2.91E-08	3.554E-05
ER-nuclear signaling pathway	GO:0006984		4.088E-08	3.329E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.695E-07	1.035E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.262E-07	1.594E-04
retrograde protein transport. ER to cytosol	GO:0030970		5.697E-07	2.32E-04
response to unfolded protein	GO:0006986		1.304E-06	4.552E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.44E-06	4.398E-04
response to protein stimulus	GO:0051789		1.585E-06	4.302E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.595E-06	3.895E-04
interphase of mitotic cell cycle	GO:0051329		1.687E-06	3.746E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		1.19E-08	2.862E-05
response to endoplasmic reticulum stress	GO:0034976		2.822E-08	3.394E-05
ER-nuclear signaling pathway	GO:0006984		4.017E-08	3.222E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.857E-07	1.117E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.575E-07	1.72E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.172E-07	2.475E-04
response to unfolded protein	GO:0006986		1.203E-06	4.134E-04
response to protein stimulus	GO:0051789		1.478E-06	4.445E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.22E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.05E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	3.778E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		1.277E-08	3.119E-05
response to endoplasmic reticulum stress	GO:0034976		2.91E-08	3.554E-05
ER-nuclear signaling pathway	GO:0006984		4.088E-08	3.329E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.695E-07	1.035E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.262E-07	1.594E-04
retrograde protein transport. ER to cytosol	GO:0030970		5.697E-07	2.32E-04
response to unfolded protein	GO:0006986		1.304E-06	4.552E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.44E-06	4.398E-04
response to protein stimulus	GO:0051789		1.585E-06	4.302E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.595E-06	3.895E-04
interphase of mitotic cell cycle	GO:0051329		1.687E-06	3.746E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		1.19E-08	2.862E-05
response to endoplasmic reticulum stress	GO:0034976		2.822E-08	3.394E-05
ER-nuclear signaling pathway	GO:0006984		4.017E-08	3.222E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.857E-07	1.117E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.575E-07	1.72E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.172E-07	2.475E-04
response to unfolded protein	GO:0006986		1.203E-06	4.134E-04
response to protein stimulus	GO:0051789		1.478E-06	4.445E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.22E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.05E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	3.778E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		1.19E-08	2.862E-05
response to endoplasmic reticulum stress	GO:0034976		2.822E-08	3.394E-05
ER-nuclear signaling pathway	GO:0006984		4.017E-08	3.222E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.857E-07	1.117E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.575E-07	1.72E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.172E-07	2.475E-04
response to unfolded protein	GO:0006986		1.203E-06	4.134E-04
response to protein stimulus	GO:0051789		1.478E-06	4.445E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.578E-06	4.22E-04
interphase of mitotic cell cycle	GO:0051329		1.683E-06	4.05E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.727E-06	3.778E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		3.513E-08	8.079E-05
response to endoplasmic reticulum stress	GO:0034976		8.333E-08	9.583E-05
ER-nuclear signaling pathway	GO:0006984		1.109E-07	8.504E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.696E-07	4.425E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.296E-06	5.964E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.473E-03
response to unfolded protein	GO:0006986		4.353E-06	1.43E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.461E-03
response to protein stimulus	GO:0051789		5.277E-06	1.349E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		3.513E-08	8.079E-05
response to endoplasmic reticulum stress	GO:0034976		8.333E-08	9.583E-05
ER-nuclear signaling pathway	GO:0006984		1.109E-07	8.504E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.696E-07	4.425E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.296E-06	5.964E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.473E-03
response to unfolded protein	GO:0006986		4.353E-06	1.43E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.461E-03
response to protein stimulus	GO:0051789		5.277E-06	1.349E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
cellular response to unfolded protein	GO:0034620		3.513E-08	8.079E-05
response to endoplasmic reticulum stress	GO:0034976		8.333E-08	9.583E-05
ER-nuclear signaling pathway	GO:0006984		1.109E-07	8.504E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.696E-07	4.425E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.296E-06	5.964E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.844E-06	1.473E-03
response to unfolded protein	GO:0006986		4.353E-06	1.43E-03
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.083E-06	1.461E-03
response to protein stimulus	GO:0051789		5.277E-06	1.349E-03
interphase of mitotic cell cycle	GO:0051329		6.323E-06	1.454E-03
interphase	GO:0051325		6.777E-06	1.417E-03