Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1400-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1952 | 1.496e-02 | 2.806e-02 | 5.912e-02 |
|---|
| IPC-NIBC-129 | 0.1456 | 1.284e-01 | 8.361e-02 | 5.030e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2239 | 8.994e-02 | 7.339e-02 | 6.063e-01 |
|---|
| Loi_GPL570 | 0.1968 | 1.231e-01 | 9.876e-02 | 4.534e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1648 | 5.710e-03 | 1.700e-05 | 4.770e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.2929 | 5.768e-02 | 2.169e-02 | 3.242e-01 |
|---|
| Schmidt | 0.1840 | 1.481e-02 | 2.068e-02 | 8.311e-02 |
|---|
| Sotiriou | 0.3016 | 1.048e-01 | 7.735e-02 | 5.735e-01 |
|---|
| Zhang | 0.3034 | 1.195e-02 | 1.775e-02 | 4.727e-02 |
|---|
Expression data for subnetwork 1400-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1400-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| tsc1 |   | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| crmp1 | | 1 | 57 | 141 | 142 | 0.065 | 0.155 | -0.056 | 0.060 | 0.087 | 0.009 | 0.138 | 0.086 | 0.030 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| tk1 | | 4 | 19 | 1 | 4 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.257 | 0.204 | 0.142 | 0.164 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 1400-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 2.21E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 2.357E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 2.525E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 2.164E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 6.586E-06 | 1.894E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.231E-06 | 2.103E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 8.231E-06 | 1.893E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.006E-05 | 2.103E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.121E-07 | 1.74E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.068E-06 | 1.305E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.993E-06 | 1.623E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.993E-06 | 1.217E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.562E-06 | 1.252E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.202E-06 | 1.304E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.202E-06 | 1.117E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.913E-06 | 1.195E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 3.913E-06 | 1.062E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.471E-06 | 1.581E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 7.466E-06 | 1.658E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.781E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 1.374E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.431E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 1.226E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 1.166E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.181E-06 | 1.487E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 7.21E-06 | 1.577E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.121E-07 | 1.74E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.068E-06 | 1.305E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.993E-06 | 1.623E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.993E-06 | 1.217E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.562E-06 | 1.252E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.202E-06 | 1.304E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.202E-06 | 1.117E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.913E-06 | 1.195E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 3.913E-06 | 1.062E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.471E-06 | 1.581E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 7.466E-06 | 1.658E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.781E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 1.374E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.431E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 1.226E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 1.166E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.181E-06 | 1.487E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 7.21E-06 | 1.577E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 1.909E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 9.545E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 1.781E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 1.374E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 1.431E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.568E-06 | 1.226E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.568E-06 | 1.073E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 4.36E-06 | 1.166E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.181E-06 | 1.487E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 7.21E-06 | 1.577E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 2.21E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 2.357E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 2.525E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 2.164E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 6.586E-06 | 1.894E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.231E-06 | 2.103E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 8.231E-06 | 1.893E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.006E-05 | 2.103E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 2.21E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 2.357E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 2.525E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 2.164E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 6.586E-06 | 1.894E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.231E-06 | 2.103E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 8.231E-06 | 1.893E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.006E-05 | 2.103E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 4.212E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 2.106E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 2.947E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 2.21E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 2.357E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 2.525E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.586E-06 | 2.164E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 6.586E-06 | 1.894E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.231E-06 | 2.103E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 8.231E-06 | 1.893E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.006E-05 | 2.103E-03 |
|---|
