Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 11200-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1483 | 1.260e-02 | 2.406e-02 | 5.047e-02 |
|---|
| IPC-NIBC-129 | 0.1844 | 1.179e-01 | 7.547e-02 | 4.690e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2321 | 4.192e-02 | 2.970e-02 | 3.636e-01 |
|---|
| Loi_GPL570 | 0.2037 | 1.744e-01 | 1.555e-01 | 5.685e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2107 | 3.034e-02 | 2.161e-03 | 3.525e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3455 | 7.296e-02 | 2.999e-02 | 3.864e-01 |
|---|
| Schmidt | 0.1582 | 1.870e-02 | 2.591e-02 | 1.052e-01 |
|---|
| Sotiriou | 0.2869 | 4.845e-02 | 3.445e-02 | 3.319e-01 |
|---|
| Zhang | 0.2819 | 4.984e-03 | 7.406e-03 | 2.233e-02 |
|---|
Expression data for subnetwork 11200-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 11200-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| cdkn3 |   | 12 | 5 | 31 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.271 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| ccnb1 | | 25 | 3 | 46 | 33 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.167 |
|---|
| brca1 | | 3 | 25 | 111 | 98 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | 0.113 | 0.077 | 0.168 | 0.064 |
|---|
| chek2 | | 1 | 57 | 111 | 116 | -0.067 | 0.038 | -0.027 | 0.142 | 0.077 | 0.120 | 0.104 | 0.065 | 0.231 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 11200-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 2.373E-07 | 1.819E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.317E-06 | 7.572E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 7.56E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.061E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 9.668E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 3.677E-06 | 1.057E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 1.128E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 1.015E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 9.225E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.644E-08 | 6.459E-05 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 6.733E-08 | 8.225E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.138E-07 | 3.37E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.426E-07 | 2.703E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.514E-07 | 4.16E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.044E-06 | 4.252E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 1.099E-06 | 3.837E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.455E-06 | 4.444E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.521E-06 | 4.129E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.566E-06 | 3.826E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.566E-06 | 3.478E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.014E-08 | 7.251E-05 |
|---|
| interphase | GO:0051325 | | 3.418E-08 | 4.112E-05 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 8.3E-08 | 6.656E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.1E-07 | 3.068E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.455E-07 | 2.625E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 4.207E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.212E-06 | 4.166E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 1.226E-06 | 3.688E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 4.793E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.818E-06 | 4.373E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.818E-06 | 3.976E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.644E-08 | 6.459E-05 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 6.733E-08 | 8.225E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.138E-07 | 3.37E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.426E-07 | 2.703E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.514E-07 | 4.16E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.044E-06 | 4.252E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 1.099E-06 | 3.837E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.455E-06 | 4.444E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.521E-06 | 4.129E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.566E-06 | 3.826E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.566E-06 | 3.478E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.014E-08 | 7.251E-05 |
|---|
| interphase | GO:0051325 | | 3.418E-08 | 4.112E-05 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 8.3E-08 | 6.656E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.1E-07 | 3.068E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.455E-07 | 2.625E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 4.207E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.212E-06 | 4.166E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 1.226E-06 | 3.688E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 4.793E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.818E-06 | 4.373E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.818E-06 | 3.976E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.014E-08 | 7.251E-05 |
|---|
| interphase | GO:0051325 | | 3.418E-08 | 4.112E-05 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 8.3E-08 | 6.656E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.1E-07 | 3.068E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.455E-07 | 2.625E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 4.207E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.212E-06 | 4.166E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 1.226E-06 | 3.688E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 4.793E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.818E-06 | 4.373E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.818E-06 | 3.976E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 2.373E-07 | 1.819E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.317E-06 | 7.572E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 7.56E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.061E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 9.668E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 3.677E-06 | 1.057E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 1.128E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 1.015E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 9.225E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 2.373E-07 | 1.819E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.317E-06 | 7.572E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 7.56E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.061E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 9.668E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 3.677E-06 | 1.057E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 1.128E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 1.015E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 9.225E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| DNA damage response. signal transduction resulting in induction of apoptosis | GO:0008630 | | 2.373E-07 | 1.819E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.317E-06 | 7.572E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 7.56E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.061E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 9.668E-04 |
|---|
| DNA damage response. signal transduction | GO:0042770 | | 3.677E-06 | 1.057E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 1.128E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 1.015E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 9.225E-04 |
|---|
