Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 10953-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1735 | 1.163e-02 | 2.242e-02 | 4.689e-02 |
|---|
| IPC-NIBC-129 | 0.1506 | 1.010e-01 | 6.268e-02 | 4.102e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2359 | 8.160e-02 | 6.543e-02 | 5.731e-01 |
|---|
| Loi_GPL570 | 0.2163 | 9.176e-02 | 6.688e-02 | 3.678e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1858 | 1.252e-02 | 1.760e-04 | 1.357e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2851 | 1.463e-01 | 7.805e-02 | 6.077e-01 |
|---|
| Schmidt | 0.2054 | 1.076e-02 | 1.519e-02 | 5.970e-02 |
|---|
| Sotiriou | 0.3216 | 7.393e-02 | 5.359e-02 | 4.562e-01 |
|---|
| Zhang | 0.2175 | 1.361e-02 | 2.019e-02 | 5.275e-02 |
|---|
Expression data for subnetwork 10953-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 10953-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| tsc1 |   | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| tomm34 | | 1 | 57 | 154 | 158 | -0.021 | 0.073 | 0.031 | 0.064 | 0.096 | 0.144 | 0.130 | 0.130 | -0.089 |
|---|
| hsp90aa1 | | 6 | 12 | 37 | 29 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.169 | 0.069 | 0.102 | -0.011 |
|---|
| birc5 | | 8 | 11 | 37 | 28 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.202 | 0.236 | 0.241 | 0.205 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 10953-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mitochondrial transport | GO:0006839 |  | 3.627E-06 | 8.341E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 5.148E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 3.909E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 2.931E-03 |
|---|
| protein refolding | GO:0042026 | | 7.644E-06 | 3.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 7.644E-06 | 2.93E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 7.644E-06 | 2.512E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.075E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.07E-05 | 2.734E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.07E-05 | 2.46E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 2.237E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.278E-06 | 3.123E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 1.278E-06 | 1.562E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| protein refolding | GO:0042026 | | 2.847E-06 | 1.739E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.391E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 3.984E-06 | 1.622E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.984E-06 | 1.39E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 1.622E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 5.311E-06 | 1.442E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 5.311E-06 | 1.297E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.179E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 5.045E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 2.097E-06 | 2.522E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 2.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 1.59E-03 |
|---|
| protein refolding | GO:0042026 | | 3.964E-06 | 1.908E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 5.548E-06 | 2.225E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 7.395E-06 | 1.977E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 7.395E-06 | 1.779E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.395E-06 | 1.618E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.278E-06 | 3.123E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 1.278E-06 | 1.562E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| protein refolding | GO:0042026 | | 2.847E-06 | 1.739E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.391E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 3.984E-06 | 1.622E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.984E-06 | 1.39E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 1.622E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 5.311E-06 | 1.442E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 5.311E-06 | 1.297E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.179E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 5.045E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 2.097E-06 | 2.522E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 2.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 1.59E-03 |
|---|
| protein refolding | GO:0042026 | | 3.964E-06 | 1.908E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 5.548E-06 | 2.225E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 7.395E-06 | 1.977E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 7.395E-06 | 1.779E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.395E-06 | 1.618E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 5.045E-03 |
|---|
| mitochondrial transport | GO:0006839 | | 2.097E-06 | 2.522E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.644E-06 | 2.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.644E-06 | 1.59E-03 |
|---|
| protein refolding | GO:0042026 | | 3.964E-06 | 1.908E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 5.548E-06 | 2.225E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 7.395E-06 | 1.977E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 7.395E-06 | 1.779E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.395E-06 | 1.618E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mitochondrial transport | GO:0006839 | | 3.627E-06 | 8.341E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 5.148E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 3.909E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 2.931E-03 |
|---|
| protein refolding | GO:0042026 | | 7.644E-06 | 3.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 7.644E-06 | 2.93E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 7.644E-06 | 2.512E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.075E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.07E-05 | 2.734E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.07E-05 | 2.46E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 2.237E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mitochondrial transport | GO:0006839 | | 3.627E-06 | 8.341E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 5.148E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 3.909E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 2.931E-03 |
|---|
| protein refolding | GO:0042026 | | 7.644E-06 | 3.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 7.644E-06 | 2.93E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 7.644E-06 | 2.512E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.075E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.07E-05 | 2.734E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.07E-05 | 2.46E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 2.237E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| mitochondrial transport | GO:0006839 | | 3.627E-06 | 8.341E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 5.148E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.098E-06 | 3.909E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.098E-06 | 2.931E-03 |
|---|
| protein refolding | GO:0042026 | | 7.644E-06 | 3.516E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 7.644E-06 | 2.93E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 7.644E-06 | 2.512E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 3.075E-03 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.07E-05 | 2.734E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.07E-05 | 2.46E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.07E-05 | 2.237E-03 |
|---|
