Study run-b2

Study informations

100 subnetworks in total page | file

190 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1022-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1248	9.509e-03	1.872e-02	3.887e-02
IPC-NIBC-129	0.1806	9.224e-02	5.620e-02	3.775e-01
Ivshina_GPL96-GPL97	0.2456	4.520e-02	3.249e-02	3.850e-01
Loi_GPL570	0.2237	2.498e-01	2.452e-01	6.967e-01
Loi_GPL96-GPL97	0.2466	6.684e-02	1.740e-02	6.444e-01
Pawitan_GPL96-GPL97	0.3352	7.037e-02	2.853e-02	3.764e-01
Schmidt	0.1310	1.498e-02	2.091e-02	8.410e-02
Sotiriou	0.3009	2.616e-02	1.816e-02	1.950e-01
Zhang	0.2853	5.918e-03	8.798e-03	2.590e-02

Expression data for subnetwork 1022-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Zhang

Desmedt

Score for each gene in subnetwork 1022-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Zhang
cdkn3		12	5	31	16	0.114	0.269	0.199	0.136	0.193	0.323	0.186	0.198	0.271
cdc2		83	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.297
cdk7		2	35	81	76	-0.102	0.121	0.116	0.126	0.170	0.090	-0.085	0.182	0.021
ccnd1		76	2	1	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.144

GO Enrichment output for subnetwork 1022-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.234E-09	5.138E-06
G1/S transition of mitotic cell cycle	GO:0000082		4.818E-07	5.541E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	2.211E-03
interphase of mitotic cell cycle	GO:0051329		3.966E-06	2.281E-03
interphase	GO:0051325		4.251E-06	1.956E-03
cellular response to unfolded protein	GO:0034620		1.645E-05	6.305E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		2.876E-05	9.449E-03
response to endoplasmic reticulum stress	GO:0034976		2.876E-05	8.268E-03
ER-nuclear signaling pathway	GO:0006984		3.463E-05	8.85E-03
fat cell differentiation	GO:0045444		3.777E-05	8.688E-03
androgen receptor signaling pathway	GO:0030521		7.214E-05	0.01508317

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.139E-10	1.011E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.131E-07	1.381E-04
interphase of mitotic cell cycle	GO:0051329		1.127E-06	9.176E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.24E-06	7.575E-04
cellular response to unfolded protein	GO:0034620		8.405E-06	4.107E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		1.119E-05	4.555E-03
response to endoplasmic reticulum stress	GO:0034976		1.437E-05	5.014E-03
fat cell differentiation	GO:0045444		1.671E-05	5.102E-03
ER-nuclear signaling pathway	GO:0006984		1.794E-05	4.87E-03
androgen receptor signaling pathway	GO:0030521		2.941E-05	7.184E-03
positive regulation of cell cycle	GO:0045787		4.974E-05	0.01104737

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.017E-10	9.665E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.162E-07	1.398E-04
interphase of mitotic cell cycle	GO:0051329		1.054E-06	8.457E-04
interphase	GO:0051325		1.158E-06	6.967E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	6.235E-04
cellular response to unfolded protein	GO:0034620		7.903E-06	3.169E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		1.169E-05	4.017E-03
response to endoplasmic reticulum stress	GO:0034976		1.386E-05	4.167E-03
fat cell differentiation	GO:0045444		1.621E-05	4.333E-03
ER-nuclear signaling pathway	GO:0006984		1.745E-05	4.199E-03
androgen receptor signaling pathway	GO:0030521		2.906E-05	6.357E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.139E-10	1.011E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.131E-07	1.381E-04
interphase of mitotic cell cycle	GO:0051329		1.127E-06	9.176E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.24E-06	7.575E-04
cellular response to unfolded protein	GO:0034620		8.405E-06	4.107E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		1.119E-05	4.555E-03
response to endoplasmic reticulum stress	GO:0034976		1.437E-05	5.014E-03
fat cell differentiation	GO:0045444		1.671E-05	5.102E-03
ER-nuclear signaling pathway	GO:0006984		1.794E-05	4.87E-03
androgen receptor signaling pathway	GO:0030521		2.941E-05	7.184E-03
positive regulation of cell cycle	GO:0045787		4.974E-05	0.01104737

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.017E-10	9.665E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.162E-07	1.398E-04
interphase of mitotic cell cycle	GO:0051329		1.054E-06	8.457E-04
interphase	GO:0051325		1.158E-06	6.967E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	6.235E-04
cellular response to unfolded protein	GO:0034620		7.903E-06	3.169E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		1.169E-05	4.017E-03
response to endoplasmic reticulum stress	GO:0034976		1.386E-05	4.167E-03
fat cell differentiation	GO:0045444		1.621E-05	4.333E-03
ER-nuclear signaling pathway	GO:0006984		1.745E-05	4.199E-03
androgen receptor signaling pathway	GO:0030521		2.906E-05	6.357E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.017E-10	9.665E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.162E-07	1.398E-04
interphase of mitotic cell cycle	GO:0051329		1.054E-06	8.457E-04
interphase	GO:0051325		1.158E-06	6.967E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.296E-06	6.235E-04
cellular response to unfolded protein	GO:0034620		7.903E-06	3.169E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		1.169E-05	4.017E-03
response to endoplasmic reticulum stress	GO:0034976		1.386E-05	4.167E-03
fat cell differentiation	GO:0045444		1.621E-05	4.333E-03
ER-nuclear signaling pathway	GO:0006984		1.745E-05	4.199E-03
androgen receptor signaling pathway	GO:0030521		2.906E-05	6.357E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.234E-09	5.138E-06
G1/S transition of mitotic cell cycle	GO:0000082		4.818E-07	5.541E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	2.211E-03
interphase of mitotic cell cycle	GO:0051329		3.966E-06	2.281E-03
interphase	GO:0051325		4.251E-06	1.956E-03
cellular response to unfolded protein	GO:0034620		1.645E-05	6.305E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		2.876E-05	9.449E-03
response to endoplasmic reticulum stress	GO:0034976		2.876E-05	8.268E-03
ER-nuclear signaling pathway	GO:0006984		3.463E-05	8.85E-03
fat cell differentiation	GO:0045444		3.777E-05	8.688E-03
androgen receptor signaling pathway	GO:0030521		7.214E-05	0.01508317

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.234E-09	5.138E-06
G1/S transition of mitotic cell cycle	GO:0000082		4.818E-07	5.541E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	2.211E-03
interphase of mitotic cell cycle	GO:0051329		3.966E-06	2.281E-03
interphase	GO:0051325		4.251E-06	1.956E-03
cellular response to unfolded protein	GO:0034620		1.645E-05	6.305E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		2.876E-05	9.449E-03
response to endoplasmic reticulum stress	GO:0034976		2.876E-05	8.268E-03
ER-nuclear signaling pathway	GO:0006984		3.463E-05	8.85E-03
fat cell differentiation	GO:0045444		3.777E-05	8.688E-03
androgen receptor signaling pathway	GO:0030521		7.214E-05	0.01508317

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.234E-09	5.138E-06
G1/S transition of mitotic cell cycle	GO:0000082		4.818E-07	5.541E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.883E-06	2.211E-03
interphase of mitotic cell cycle	GO:0051329		3.966E-06	2.281E-03
interphase	GO:0051325		4.251E-06	1.956E-03
cellular response to unfolded protein	GO:0034620		1.645E-05	6.305E-03
nucleotide-excision repair. DNA damage removal	GO:0000718		2.876E-05	9.449E-03
response to endoplasmic reticulum stress	GO:0034976		2.876E-05	8.268E-03
ER-nuclear signaling pathway	GO:0006984		3.463E-05	8.85E-03
fat cell differentiation	GO:0045444		3.777E-05	8.688E-03
androgen receptor signaling pathway	GO:0030521		7.214E-05	0.01508317