Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1019-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2164 | 1.041e-02 | 2.031e-02 | 4.231e-02 |
|---|
| IPC-NIBC-129 | 0.1765 | 8.587e-02 | 5.157e-02 | 3.530e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2413 | 4.906e-02 | 3.581e-02 | 4.090e-01 |
|---|
| Loi_GPL570 | 0.2295 | 9.767e-02 | 7.268e-02 | 3.850e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1824 | 2.604e-03 | 2.000e-06 | 1.446e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3476 | 1.537e-01 | 8.351e-02 | 6.247e-01 |
|---|
| Schmidt | 0.2009 | 1.961e-02 | 2.713e-02 | 1.102e-01 |
|---|
| Sotiriou | 0.2839 | 7.818e-02 | 5.683e-02 | 4.743e-01 |
|---|
| Zhang | 0.2128 | 4.818e-03 | 7.159e-03 | 2.168e-02 |
|---|
Expression data for subnetwork 1019-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1019-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| tsc1 |   | 11 | 6 | 1 | 3 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | -0.007 |
|---|
| ccnb2 | | 5 | 13 | 58 | 45 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.366 | 0.240 | 0.169 | 0.211 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| mcm2 | | 2 | 35 | 90 | 82 | 0.151 | 0.254 | 0.188 | 0.128 | 0.154 | 0.267 | 0.224 | 0.200 | 0.012 |
|---|
| cdk4 | | 1 | 57 | 90 | 93 | 0.029 | 0.103 | 0.122 | 0.148 | 0.117 | 0.222 | -0.009 | 0.122 | 0.011 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 1019-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.152E-06 | 2.651E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 2.707E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 2.273E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.525E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.782E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 2.163E-03 |
|---|
| thymus development | GO:0048538 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 8.117E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 1.063E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 1.063E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.487E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 1.275E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.152E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.195E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 1.062E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.168E-03 |
|---|
| thymus development | GO:0048538 | | 4.782E-06 | 1.062E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 1.193E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 7.954E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.234E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.186E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.192E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 1.073E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.459E-06 | 9.753E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 8.117E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 1.063E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 1.063E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.487E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 1.275E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.152E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.195E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 1.062E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.168E-03 |
|---|
| thymus development | GO:0048538 | | 4.782E-06 | 1.062E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 1.193E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 7.954E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.234E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.186E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.192E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 1.073E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.459E-06 | 9.753E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 1.193E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 7.954E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.669E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.234E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.186E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.192E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 1.073E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.459E-06 | 9.753E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 2.707E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 2.273E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.525E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.782E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 2.163E-03 |
|---|
| thymus development | GO:0048538 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 2.707E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 2.273E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.525E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.782E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 2.163E-03 |
|---|
| thymus development | GO:0048538 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 2.707E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 2.273E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.525E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.782E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 2.163E-03 |
|---|
| thymus development | GO:0048538 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
