Study run-b2
Study informations
100 subnetworks in total page | file
190 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 10153-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1598 | 8.702e-03 | 1.730e-02 | 3.577e-02 |
|---|
| IPC-NIBC-129 | 0.1701 | 3.640e-02 | 1.844e-02 | 1.406e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2498 | 5.565e-02 | 4.160e-02 | 4.475e-01 |
|---|
| Loi_GPL570 | 0.2980 | 5.655e-02 | 3.484e-02 | 2.529e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1627 | 2.035e-02 | 7.100e-04 | 2.368e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3046 | 1.017e-01 | 4.738e-02 | 4.863e-01 |
|---|
| Schmidt | 0.2401 | 2.413e-02 | 3.313e-02 | 1.350e-01 |
|---|
| Sotiriou | 0.2708 | 1.086e-01 | 8.028e-02 | 5.858e-01 |
|---|
| Zhang | 0.2514 | 9.855e-03 | 1.464e-02 | 4.012e-02 |
|---|
Expression data for subnetwork 10153-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 10153-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Zhang |
|---|
| sp1 |   | 14 | 4 | 11 | 6 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.091 |
|---|
| cebpz | | 1 | 57 | 69 | 71 | -0.003 | 0.077 | -0.007 | 0.058 | 0.086 | -0.030 | 0.143 | 0.098 | 0.136 |
|---|
| cdc2 | | 83 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.297 |
|---|
| bop1 | | 1 | 57 | 69 | 71 | 0.083 | 0.081 | 0.080 | 0.106 | 0.101 | 0.220 | 0.141 | 0.040 | 0.080 |
|---|
| pes1 | | 1 | 57 | 69 | 71 | 0.049 | 0.114 | 0.155 | 0.128 | 0.103 | 0.088 | 0.177 | 0.048 | 0.100 |
|---|
| nop56 | | 1 | 57 | 69 | 71 | 0.084 | 0.176 | 0.209 | 0.287 | 0.111 | 0.219 | 0.116 | 0.086 | 0.111 |
|---|
| ftsj3 | | 1 | 57 | 69 | 71 | 0.029 | 0.177 | 0.189 | 0.136 | 0.118 | 0.150 | 0.132 | 0.105 | -0.052 |
|---|
| ccnd1 | | 76 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.144 |
|---|
GO Enrichment output for subnetwork 10153-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 |  | 3.011E-09 | 6.925E-06 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.789E-07 | 2.057E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.239E-07 | 3.25E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.64E-07 | 3.243E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 2.059E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 4.101E-03 |
|---|
| RNA methylation | GO:0001510 | | 1.07E-05 | 3.515E-03 |
|---|
| rRNA modification | GO:0000154 | | 1.07E-05 | 3.075E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 2.189E-05 | 5.593E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.65E-05 | 6.096E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.331E-05 | 0.01114609 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.031E-07 | 2.518E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.346E-07 | 2.866E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.295E-07 | 2.683E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.551E-06 | 9.472E-04 |
|---|
| virus-infected cell apoptosis | GO:0006926 | | 2.151E-06 | 1.051E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 2.151E-06 | 8.759E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 3.226E-06 | 1.126E-03 |
|---|
| rRNA modification | GO:0000154 | | 4.515E-06 | 1.379E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.018E-06 | 1.634E-03 |
|---|
| RNA methylation | GO:0001510 | | 7.736E-06 | 1.89E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.04E-05 | 2.311E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.186E-07 | 2.853E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.809E-07 | 3.379E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.997E-07 | 3.206E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 1.261E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 2.644E-06 | 1.272E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 3.964E-06 | 1.59E-03 |
|---|
| rRNA modification | GO:0000154 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| RNA methylation | GO:0001510 | | 9.505E-06 | 2.541E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.183E-05 | 2.847E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 1.452E-05 | 3.177E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.031E-07 | 2.518E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.346E-07 | 2.866E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.295E-07 | 2.683E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.551E-06 | 9.472E-04 |
|---|
| virus-infected cell apoptosis | GO:0006926 | | 2.151E-06 | 1.051E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 2.151E-06 | 8.759E-04 |
|---|
| establishment of spindle localization | GO:0051293 | | 3.226E-06 | 1.126E-03 |
|---|
| rRNA modification | GO:0000154 | | 4.515E-06 | 1.379E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.018E-06 | 1.634E-03 |
|---|
| RNA methylation | GO:0001510 | | 7.736E-06 | 1.89E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.04E-05 | 2.311E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.186E-07 | 2.853E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.809E-07 | 3.379E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.997E-07 | 3.206E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 1.261E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 2.644E-06 | 1.272E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 3.964E-06 | 1.59E-03 |
|---|
| rRNA modification | GO:0000154 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| RNA methylation | GO:0001510 | | 9.505E-06 | 2.541E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.183E-05 | 2.847E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 1.452E-05 | 3.177E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.186E-07 | 2.853E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.809E-07 | 3.379E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.997E-07 | 3.206E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.097E-06 | 1.261E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 2.644E-06 | 1.272E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 3.964E-06 | 1.59E-03 |
|---|
| rRNA modification | GO:0000154 | | 5.548E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.395E-06 | 2.224E-03 |
|---|
| RNA methylation | GO:0001510 | | 9.505E-06 | 2.541E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.183E-05 | 2.847E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 1.452E-05 | 3.177E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 3.011E-09 | 6.925E-06 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.789E-07 | 2.057E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.239E-07 | 3.25E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.64E-07 | 3.243E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 2.059E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 4.101E-03 |
|---|
| RNA methylation | GO:0001510 | | 1.07E-05 | 3.515E-03 |
|---|
| rRNA modification | GO:0000154 | | 1.07E-05 | 3.075E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 2.189E-05 | 5.593E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.65E-05 | 6.096E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.331E-05 | 0.01114609 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 3.011E-09 | 6.925E-06 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.789E-07 | 2.057E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.239E-07 | 3.25E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.64E-07 | 3.243E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 2.059E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 4.101E-03 |
|---|
| RNA methylation | GO:0001510 | | 1.07E-05 | 3.515E-03 |
|---|
| rRNA modification | GO:0000154 | | 1.07E-05 | 3.075E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 2.189E-05 | 5.593E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.65E-05 | 6.096E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.331E-05 | 0.01114609 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 3.011E-09 | 6.925E-06 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.789E-07 | 2.057E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.239E-07 | 3.25E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.64E-07 | 3.243E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.477E-06 | 2.059E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.07E-05 | 4.101E-03 |
|---|
| RNA methylation | GO:0001510 | | 1.07E-05 | 3.515E-03 |
|---|
| rRNA modification | GO:0000154 | | 1.07E-05 | 3.075E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 2.189E-05 | 5.593E-03 |
|---|
| response to protein stimulus | GO:0051789 | | 2.65E-05 | 6.096E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.331E-05 | 0.01114609 |
|---|
