Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 995-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1593 | 1.322e-02 | 4.734e-03 | 7.268e-02 |
|---|
| IPC-NIBC-129 | 0.1946 | 6.374e-02 | 5.277e-02 | 2.981e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2335 | 3.565e-02 | 2.700e-02 | 3.472e-01 |
|---|
| Loi_GPL570 | 0.2538 | 1.357e-01 | 1.658e-01 | 4.674e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1715 | 1.556e-02 | 8.873e-03 | 2.149e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3214 | 5.221e-02 | 2.365e-02 | 3.188e-01 |
|---|
| Schmidt | 0.1871 | 1.103e-02 | 1.195e-02 | 7.931e-02 |
|---|
| Sotiriou | 0.3216 | 1.007e-01 | 4.225e-02 | 5.701e-01 |
|---|
| Wang | 0.1319 | 1.517e-01 | 1.409e-01 | 4.034e-01 |
|---|
| Zhang | 0.3142 | 7.509e-03 | 3.697e-03 | 3.696e-02 |
|---|
Expression data for subnetwork 995-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 995-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| cdc25c | | 2 | 53 | 51 | 49 | -0.025 | 0.187 | 0.084 | 0.267 | 0.070 | 0.125 | 0.204 | 0.250 | 0.052 | 0.054 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 995-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 4.458E-09 | 1.025E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.764E-08 | 4.328E-05 |
|---|
| interphase | GO:0051325 | | 4.132E-08 | 3.168E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.696E-07 | 4.425E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 8.423E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.831E-06 | 7.02E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 6.017E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 1.105E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 9.823E-04 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.178E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.377E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.239E-09 | 3.026E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.126E-08 | 1.376E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.419E-07 | 1.97E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.121E-07 | 4.349E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.068E-06 | 5.218E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.068E-06 | 4.348E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.993E-06 | 6.955E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.993E-06 | 6.086E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.562E-06 | 6.954E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.202E-06 | 7.822E-04 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.202E-06 | 7.111E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.442E-09 | 3.469E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.156E-08 | 1.391E-05 |
|---|
| interphase | GO:0051325 | | 1.312E-08 | 1.052E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.783E-07 | 1.674E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 3.818E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.935E-07 | 3.182E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 2.727E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 6.679E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 5.937E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 6.868E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 7.804E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.239E-09 | 3.026E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.126E-08 | 1.376E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.419E-07 | 1.97E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.121E-07 | 4.349E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.068E-06 | 5.218E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.068E-06 | 4.348E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.993E-06 | 6.955E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.993E-06 | 6.086E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.562E-06 | 6.954E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.202E-06 | 7.822E-04 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.202E-06 | 7.111E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.442E-09 | 3.469E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.156E-08 | 1.391E-05 |
|---|
| interphase | GO:0051325 | | 1.312E-08 | 1.052E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.783E-07 | 1.674E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 3.818E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.935E-07 | 3.182E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 2.727E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 6.679E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 5.937E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 6.868E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 7.804E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.442E-09 | 3.469E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.156E-08 | 1.391E-05 |
|---|
| interphase | GO:0051325 | | 1.312E-08 | 1.052E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.783E-07 | 1.674E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.935E-07 | 3.818E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.935E-07 | 3.182E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.935E-07 | 2.727E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.221E-06 | 6.679E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.221E-06 | 5.937E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.855E-06 | 6.868E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.568E-06 | 7.804E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.458E-09 | 1.025E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.764E-08 | 4.328E-05 |
|---|
| interphase | GO:0051325 | | 4.132E-08 | 3.168E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.696E-07 | 4.425E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 8.423E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.831E-06 | 7.02E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 6.017E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 1.105E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 9.823E-04 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.178E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.377E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.458E-09 | 1.025E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.764E-08 | 4.328E-05 |
|---|
| interphase | GO:0051325 | | 4.132E-08 | 3.168E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.696E-07 | 4.425E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 8.423E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.831E-06 | 7.02E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 6.017E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 1.105E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 9.823E-04 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.178E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.458E-09 | 1.025E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.764E-08 | 4.328E-05 |
|---|
| interphase | GO:0051325 | | 4.132E-08 | 3.168E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.696E-07 | 4.425E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 8.423E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.831E-06 | 7.02E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 6.017E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 1.105E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 9.823E-04 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.178E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.458E-09 | 1.025E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.764E-08 | 4.328E-05 |
|---|
| interphase | GO:0051325 | | 4.132E-08 | 3.168E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.696E-07 | 4.425E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.831E-06 | 8.423E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.831E-06 | 7.02E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.831E-06 | 6.017E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.844E-06 | 1.105E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.844E-06 | 9.823E-04 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 5.124E-06 | 1.178E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 6.586E-06 | 1.377E-03 |
|---|
