Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 990-11-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1625	3.477e-02	1.753e-02	1.530e-01
IPC-NIBC-129	0.1851	1.361e-01	1.244e-01	5.405e-01
Ivshina_GPL96-GPL97	0.1869	4.297e-02	3.356e-02	3.950e-01
Loi_GPL570	0.1930	7.317e-02	9.408e-02	3.019e-01
Loi_GPL96-GPL97	0.1839	1.376e-02	7.533e-03	1.891e-01
Pawitan_GPL96-GPL97	0.3186	1.266e-01	7.368e-02	5.707e-01
Schmidt	0.2341	4.148e-02	4.358e-02	2.444e-01
Sotiriou	0.2381	8.248e-02	3.179e-02	5.068e-01
Wang	0.1952	5.194e-02	3.680e-02	1.855e-01
Zhang	0.2329	7.873e-03	3.897e-03	3.842e-02

Expression data for subnetwork 990-11-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 990-11-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
cdc6		1	90	223	228	0.103	0.108	0.063	0.043	0.105	0.083	0.235	0.117	-0.001	0.119
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
ccnb1		33	4	68	40	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.152	0.167
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 990-11-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.754E-07	4.035E-04
interphase	GO:0051325		1.925E-07	2.214E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	1.987E-03
regulation of DNA replication	GO:0006275		3.156E-06	1.815E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.654E-03
traversing start control point of mitotic cell cycle	GO:0007089		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	1.091E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		3.811E-08	9.31E-05
positive regulation of cell cycle	GO:0045787		6.547E-07	7.998E-04
regulation of DNA replication	GO:0006275		1.048E-06	8.531E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.106E-06	6.752E-04
positive regulation of viral genome replication	GO:0045070		1.234E-06	6.03E-04
meiotic chromosome segregation	GO:0045132		1.234E-06	5.025E-04
chromosome segregation	GO:0007059		1.806E-06	6.304E-04
traversing start control point of mitotic cell cycle	GO:0007089		1.851E-06	5.652E-04
regulation of retroviral genome replication	GO:0045091		1.851E-06	5.024E-04
establishment of spindle localization	GO:0051293		1.851E-06	4.521E-04
phosphoinositide-mediated signaling	GO:0048015		2.542E-06	5.645E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		6.498E-08	1.564E-04
interphase	GO:0051325		7.368E-08	8.864E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	8.617E-04
regulation of DNA replication	GO:0006275		1.719E-06	1.034E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	8.27E-04
traversing start control point of mitotic cell cycle	GO:0007089		1.719E-06	6.892E-04
regulation of retroviral genome replication	GO:0045091		1.719E-06	5.907E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	5.169E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	4.849E-04
establishment of spindle localization	GO:0051293		2.577E-06	6.201E-04
chromosome segregation	GO:0007059		2.962E-06	6.479E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		3.811E-08	9.31E-05
positive regulation of cell cycle	GO:0045787		6.547E-07	7.998E-04
regulation of DNA replication	GO:0006275		1.048E-06	8.531E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.106E-06	6.752E-04
positive regulation of viral genome replication	GO:0045070		1.234E-06	6.03E-04
meiotic chromosome segregation	GO:0045132		1.234E-06	5.025E-04
chromosome segregation	GO:0007059		1.806E-06	6.304E-04
traversing start control point of mitotic cell cycle	GO:0007089		1.851E-06	5.652E-04
regulation of retroviral genome replication	GO:0045091		1.851E-06	5.024E-04
establishment of spindle localization	GO:0051293		1.851E-06	4.521E-04
phosphoinositide-mediated signaling	GO:0048015		2.542E-06	5.645E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		6.498E-08	1.564E-04
interphase	GO:0051325		7.368E-08	8.864E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	8.617E-04
regulation of DNA replication	GO:0006275		1.719E-06	1.034E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	8.27E-04
traversing start control point of mitotic cell cycle	GO:0007089		1.719E-06	6.892E-04
regulation of retroviral genome replication	GO:0045091		1.719E-06	5.907E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	5.169E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	4.849E-04
establishment of spindle localization	GO:0051293		2.577E-06	6.201E-04
chromosome segregation	GO:0007059		2.962E-06	6.479E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		6.498E-08	1.564E-04
interphase	GO:0051325		7.368E-08	8.864E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	8.617E-04
regulation of DNA replication	GO:0006275		1.719E-06	1.034E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	8.27E-04
traversing start control point of mitotic cell cycle	GO:0007089		1.719E-06	6.892E-04
regulation of retroviral genome replication	GO:0045091		1.719E-06	5.907E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	5.169E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.814E-06	4.849E-04
establishment of spindle localization	GO:0051293		2.577E-06	6.201E-04
chromosome segregation	GO:0007059		2.962E-06	6.479E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.754E-07	4.035E-04
interphase	GO:0051325		1.925E-07	2.214E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	1.987E-03
regulation of DNA replication	GO:0006275		3.156E-06	1.815E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.654E-03
traversing start control point of mitotic cell cycle	GO:0007089		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	1.091E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.754E-07	4.035E-04
interphase	GO:0051325		1.925E-07	2.214E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	1.987E-03
regulation of DNA replication	GO:0006275		3.156E-06	1.815E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.654E-03
traversing start control point of mitotic cell cycle	GO:0007089		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	1.091E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.754E-07	4.035E-04
interphase	GO:0051325		1.925E-07	2.214E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	1.987E-03
regulation of DNA replication	GO:0006275		3.156E-06	1.815E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.654E-03
traversing start control point of mitotic cell cycle	GO:0007089		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	1.091E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.754E-07	4.035E-04
interphase	GO:0051325		1.925E-07	2.214E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	1.987E-03
regulation of DNA replication	GO:0006275		3.156E-06	1.815E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	1.654E-03
traversing start control point of mitotic cell cycle	GO:0007089		3.596E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	1.181E-03
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	1.091E-03
chromosome segregation	GO:0007059		5.323E-06	1.36E-03
DNA topological change	GO:0006265		5.392E-06	1.24E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	1.578E-03