Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9650-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2147 | 1.508e-02 | 5.661e-03 | 8.058e-02 |
|---|
| IPC-NIBC-129 | 0.2119 | 8.332e-02 | 7.152e-02 | 3.739e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2272 | 2.538e-02 | 1.816e-02 | 2.702e-01 |
|---|
| Loi_GPL570 | 0.2325 | 1.466e-01 | 1.779e-01 | 4.916e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1612 | 1.694e-03 | 4.400e-04 | 1.236e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3124 | 4.951e-02 | 2.209e-02 | 3.065e-01 |
|---|
| Schmidt | 0.1811 | 1.951e-02 | 2.085e-02 | 1.314e-01 |
|---|
| Sotiriou | 0.2859 | 1.186e-01 | 5.335e-02 | 6.236e-01 |
|---|
| Wang | 0.1681 | 8.259e-02 | 6.623e-02 | 2.624e-01 |
|---|
| Zhang | 0.3190 | 8.744e-03 | 4.382e-03 | 4.188e-02 |
|---|
Expression data for subnetwork 9650-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9650-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| pin1 |   | 4 | 27 | 26 | 20 | -0.012 | 0.181 | 0.133 | 0.270 | 0.112 | 0.072 | 0.063 | 0.161 | 0.033 | 0.259 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| mybl2 | | 5 | 20 | 92 | 63 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.275 | 0.202 | 0.182 | 0.120 | 0.074 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| pkmyt1 | | 4 | 27 | 26 | 20 | 0.219 | 0.222 | 0.151 | 0.190 | 0.092 | 0.202 | 0.156 | 0.061 | 0.117 | 0.288 |
|---|
| mtfr1 | | 1 | 90 | 108 | 114 | 0.058 | 0.142 | 0.080 | -0.054 | 0.129 | 0.201 | 0.066 | 0.070 | 0.190 | 0.139 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 9650-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.767E-06 | 6.363E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.292E-06 | 1.893E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.367E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.704E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 3.042E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.704E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.123E-05 | 2.349E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 1.562E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 8.667E-07 | 1.059E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 7.087E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 7.971E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 9.917E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.552E-06 | 8.908E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 9.561E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.062E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 9.559E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.062E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 2.524E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 9.721E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 1.422E-06 | 8.555E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.632E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 1.36E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.311E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 5.449E-06 | 1.457E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 5.449E-06 | 1.311E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.449E-06 | 1.192E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 1.562E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 8.667E-07 | 1.059E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 7.087E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 7.971E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 9.917E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.552E-06 | 8.908E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 9.561E-04 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.062E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 9.559E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.062E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 2.524E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 9.721E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 1.422E-06 | 8.555E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.632E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 1.36E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.311E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 5.449E-06 | 1.457E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 5.449E-06 | 1.311E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.449E-06 | 1.192E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.049E-06 | 2.524E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 1.458E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 9.721E-04 |
|---|
| regulation of mitosis | GO:0007088 | | 1.422E-06 | 8.555E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 1.632E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 1.36E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.185E-06 | 1.438E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.36E-06 | 1.311E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 5.449E-06 | 1.457E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 5.449E-06 | 1.311E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 5.449E-06 | 1.192E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.292E-06 | 1.893E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.367E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.704E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 3.042E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.704E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.123E-05 | 2.349E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.292E-06 | 1.893E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.367E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.704E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 3.042E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.704E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.123E-05 | 2.349E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.292E-06 | 1.893E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.367E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.704E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 3.042E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.704E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.123E-05 | 2.349E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 2.256E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.292E-06 | 1.893E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.841E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 2.367E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 2.704E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.058E-05 | 3.042E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.058E-05 | 2.704E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.058E-05 | 2.433E-03 |
|---|
| regulation of cell cycle process | GO:0010564 | | 1.123E-05 | 2.349E-03 |
|---|
