Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 890-10-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1663 | 1.414e-02 | 5.186e-03 | 7.662e-02 |
|---|
| IPC-NIBC-129 | 0.2076 | 4.922e-02 | 3.932e-02 | 2.361e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2302 | 2.760e-02 | 2.003e-02 | 2.880e-01 |
|---|
| Loi_GPL570 | 0.2742 | 1.270e-01 | 1.561e-01 | 4.473e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1945 | 1.187e-02 | 6.184e-03 | 1.612e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3355 | 6.789e-02 | 3.313e-02 | 3.845e-01 |
|---|
| Schmidt | 0.1922 | 1.018e-02 | 1.105e-02 | 7.373e-02 |
|---|
| Sotiriou | 0.3266 | 6.948e-02 | 2.488e-02 | 4.546e-01 |
|---|
| Wang | 0.1614 | 9.243e-02 | 7.628e-02 | 2.849e-01 |
|---|
| Zhang | 0.2904 | 5.909e-03 | 2.829e-03 | 3.032e-02 |
|---|
Expression data for subnetwork 890-10-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 890-10-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| tsc1 |   | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| ccna2 | | 2 | 53 | 81 | 69 | 0.065 | 0.183 | 0.157 | 0.177 | 0.133 | 0.276 | 0.264 | 0.176 | 0.220 | 0.173 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 890-10-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.044E-06 | 2.551E-03 |
|---|
| G2/M transition checkpoint | GO:0031576 | | 1.044E-06 | 1.276E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.455E-06 | 1.185E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.521E-06 | 9.29E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.566E-06 | 7.652E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.73E-06 | 7.046E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.73E-06 | 6.039E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.12E-06 | 6.475E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.291E-06 | 6.22E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 2.758E-06 | 6.739E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 6.49E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.044E-06 | 2.551E-03 |
|---|
| G2/M transition checkpoint | GO:0031576 | | 1.044E-06 | 1.276E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.455E-06 | 1.185E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.521E-06 | 9.29E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.566E-06 | 7.652E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.73E-06 | 7.046E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.73E-06 | 6.039E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.12E-06 | 6.475E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.291E-06 | 6.22E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 2.758E-06 | 6.739E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.922E-06 | 6.49E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
