Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 8721-10-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1635	1.541e-02	5.833e-03	8.199e-02
IPC-NIBC-129	0.2013	6.008e-02	4.934e-02	2.829e-01
Ivshina_GPL96-GPL97	0.2261	3.126e-02	2.316e-02	3.158e-01
Loi_GPL570	0.2585	1.259e-01	1.548e-01	4.447e-01
Loi_GPL96-GPL97	0.1877	1.326e-02	7.167e-03	1.818e-01
Pawitan_GPL96-GPL97	0.3046	5.553e-02	2.560e-02	3.334e-01
Schmidt	0.1929	2.159e-02	2.302e-02	1.433e-01
Sotiriou	0.2795	7.763e-02	2.916e-02	4.881e-01
Wang	0.2033	4.514e-02	3.076e-02	1.666e-01
Zhang	0.3086	9.970e-03	5.074e-03	4.662e-02

Expression data for subnetwork 8721-10-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 8721-10-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
calm1		16	10	35	19	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.087	0.162
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
edf1		1	90	103	111	-0.036	0.087	0.112	0.146	0.072	0.131	0.068	0.007	0.065	0.093
hmmr		10	14	35	23	0.112	0.310	0.147	0.127	0.145	0.221	0.179	0.233	0.227	0.144
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 8721-10-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.03783043
endothelial cell differentiation	GO:0045446		2.192E-05	0.02520682
cellular response to unfolded protein	GO:0034620		9.354E-05	0.0717125
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.05378438
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.07509739
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.07531495
fat cell differentiation	GO:0045444		2.142E-04	0.07038678
base-excision repair	GO:0006284		2.142E-04	0.06158843
response to calcium ion	GO:0051592		6.003E-04	0.15339937
positive regulation of DNA binding	GO:0043388		6.307E-04	0.14506198
positive regulation of binding	GO:0051099		6.938E-04	0.14506791

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	0.02053359
endothelial cell differentiation	GO:0045446		8.405E-06	0.01026679
nucleotide-excision repair. DNA gap filling	GO:0006297		3.592E-05	0.02925457
cellular response to unfolded protein	GO:0034620		5.68E-05	0.03469293
response to endoplasmic reticulum stress	GO:0034976		9.697E-05	0.04737849
fat cell differentiation	GO:0045444		1.127E-04	0.0458897
base-excision repair	GO:0006284		1.127E-04	0.03933403
ER-nuclear signaling pathway	GO:0006984		1.21E-04	0.03695423
G1/S transition of mitotic cell cycle	GO:0000082		3.067E-04	0.08325966
positive regulation of cell cycle	GO:0045787		3.341E-04	0.08161178
positive regulation of DNA binding	GO:0043388		3.341E-04	0.07419253

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
endothelial cell differentiation	GO:0045446		9.426E-06	0.02268
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	0.01134
nucleotide-excision repair. DNA gap filling	GO:0006297		4.028E-05	0.03230832
cellular response to unfolded protein	GO:0034620		5.734E-05	0.03449285
response to endoplasmic reticulum stress	GO:0034976		1.004E-04	0.04830826
fat cell differentiation	GO:0045444		1.174E-04	0.04706721
base-excision repair	GO:0006284		1.174E-04	0.04034333
ER-nuclear signaling pathway	GO:0006984		1.264E-04	0.03800237
G1/S transition of mitotic cell cycle	GO:0000082		3.438E-04	0.09190501
response to calcium ion	GO:0051592		3.589E-04	0.08636013
positive regulation of DNA binding	GO:0043388		3.589E-04	0.07850921

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	0.02053359
endothelial cell differentiation	GO:0045446		8.405E-06	0.01026679
nucleotide-excision repair. DNA gap filling	GO:0006297		3.592E-05	0.02925457
cellular response to unfolded protein	GO:0034620		5.68E-05	0.03469293
response to endoplasmic reticulum stress	GO:0034976		9.697E-05	0.04737849
fat cell differentiation	GO:0045444		1.127E-04	0.0458897
base-excision repair	GO:0006284		1.127E-04	0.03933403
ER-nuclear signaling pathway	GO:0006984		1.21E-04	0.03695423
G1/S transition of mitotic cell cycle	GO:0000082		3.067E-04	0.08325966
positive regulation of cell cycle	GO:0045787		3.341E-04	0.08161178
positive regulation of DNA binding	GO:0043388		3.341E-04	0.07419253

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
endothelial cell differentiation	GO:0045446		9.426E-06	0.02268
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	0.01134
nucleotide-excision repair. DNA gap filling	GO:0006297		4.028E-05	0.03230832
cellular response to unfolded protein	GO:0034620		5.734E-05	0.03449285
response to endoplasmic reticulum stress	GO:0034976		1.004E-04	0.04830826
fat cell differentiation	GO:0045444		1.174E-04	0.04706721
base-excision repair	GO:0006284		1.174E-04	0.04034333
ER-nuclear signaling pathway	GO:0006984		1.264E-04	0.03800237
G1/S transition of mitotic cell cycle	GO:0000082		3.438E-04	0.09190501
response to calcium ion	GO:0051592		3.589E-04	0.08636013
positive regulation of DNA binding	GO:0043388		3.589E-04	0.07850921

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
endothelial cell differentiation	GO:0045446		9.426E-06	0.02268
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	0.01134
nucleotide-excision repair. DNA gap filling	GO:0006297		4.028E-05	0.03230832
cellular response to unfolded protein	GO:0034620		5.734E-05	0.03449285
response to endoplasmic reticulum stress	GO:0034976		1.004E-04	0.04830826
fat cell differentiation	GO:0045444		1.174E-04	0.04706721
base-excision repair	GO:0006284		1.174E-04	0.04034333
ER-nuclear signaling pathway	GO:0006984		1.264E-04	0.03800237
G1/S transition of mitotic cell cycle	GO:0000082		3.438E-04	0.09190501
response to calcium ion	GO:0051592		3.589E-04	0.08636013
positive regulation of DNA binding	GO:0043388		3.589E-04	0.07850921

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.03783043
endothelial cell differentiation	GO:0045446		2.192E-05	0.02520682
cellular response to unfolded protein	GO:0034620		9.354E-05	0.0717125
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.05378438
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.07509739
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.07531495
fat cell differentiation	GO:0045444		2.142E-04	0.07038678
base-excision repair	GO:0006284		2.142E-04	0.06158843
response to calcium ion	GO:0051592		6.003E-04	0.15339937
positive regulation of DNA binding	GO:0043388		6.307E-04	0.14506198
positive regulation of binding	GO:0051099		6.938E-04	0.14506791

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.03783043
endothelial cell differentiation	GO:0045446		2.192E-05	0.02520682
cellular response to unfolded protein	GO:0034620		9.354E-05	0.0717125
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.05378438
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.07509739
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.07531495
fat cell differentiation	GO:0045444		2.142E-04	0.07038678
base-excision repair	GO:0006284		2.142E-04	0.06158843
response to calcium ion	GO:0051592		6.003E-04	0.15339937
positive regulation of DNA binding	GO:0043388		6.307E-04	0.14506198
positive regulation of binding	GO:0051099		6.938E-04	0.14506791

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.03783043
endothelial cell differentiation	GO:0045446		2.192E-05	0.02520682
cellular response to unfolded protein	GO:0034620		9.354E-05	0.0717125
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.05378438
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.07509739
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.07531495
fat cell differentiation	GO:0045444		2.142E-04	0.07038678
base-excision repair	GO:0006284		2.142E-04	0.06158843
response to calcium ion	GO:0051592		6.003E-04	0.15339937
positive regulation of DNA binding	GO:0043388		6.307E-04	0.14506198
positive regulation of binding	GO:0051099		6.938E-04	0.14506791

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.03783043
endothelial cell differentiation	GO:0045446		2.192E-05	0.02520682
cellular response to unfolded protein	GO:0034620		9.354E-05	0.0717125
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.05378438
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.07509739
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.07531495
fat cell differentiation	GO:0045444		2.142E-04	0.07038678
base-excision repair	GO:0006284		2.142E-04	0.06158843
response to calcium ion	GO:0051592		6.003E-04	0.15339937
positive regulation of DNA binding	GO:0043388		6.307E-04	0.14506198
positive regulation of binding	GO:0051099		6.938E-04	0.14506791