Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 7916-9-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1672	1.140e-02	3.866e-03	6.463e-02
IPC-NIBC-129	0.2117	3.591e-02	2.743e-02	1.747e-01
Ivshina_GPL96-GPL97	0.2405	2.548e-02	1.824e-02	2.710e-01
Loi_GPL570	0.2989	6.814e-02	8.814e-02	2.861e-01
Loi_GPL96-GPL97	0.1801	1.145e-02	5.890e-03	1.549e-01
Pawitan_GPL96-GPL97	0.3959	7.665e-02	3.871e-02	4.176e-01
Schmidt	0.2394	2.011e-02	2.148e-02	1.348e-01
Sotiriou	0.2840	8.770e-02	3.470e-02	5.260e-01
Wang	0.1959	5.125e-02	3.618e-02	1.836e-01
Zhang	0.2793	2.113e-03	8.990e-04	1.282e-02

Expression data for subnetwork 7916-9-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 7916-9-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
fen1		7	15	8	6	0.045	0.194	0.169	0.196	0.136	0.332	0.221	0.144	0.106	0.056
cttn		5	20	8	9	0.067	0.065	0.123	0.238	0.126	0.216	0.069	0.115	0.129	0.025
bat2		1	90	8	33	0.039	0.182	-0.001	-0.013	0.062	0.109	0.186	0.099	-0.078	0.059
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
p4ha2		1	90	8	33	0.077	0.313	0.070	0.159	0.149	0.180	0.055	0.105	0.184	0.043
eif2s1		13	12	8	4	-0.031	0.151	0.253	0.182	0.098	0.270	0.233	0.038	0.122	0.239
grb2		6	17	8	7	0.084	-0.013	0.086	-0.031	0.162	0.065	0.158	0.127	-0.097	0.194

GO Enrichment output for subnetwork 7916-9-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		1.604E-05	0.03689356
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.02693876
UV protection	GO:0009650		5.01E-05	0.03840915
phosphoinositide-mediated signaling	GO:0048015		5.937E-05	0.03413632
cellular response to unfolded protein	GO:0034620		1.331E-04	0.06121606
nucleotide-excision repair. DNA gap filling	GO:0006297		1.331E-04	0.05101339
response to light stimulus	GO:0009416		1.459E-04	0.04793355
response to endoplasmic reticulum stress	GO:0034976		2.321E-04	0.06673843
ER-nuclear signaling pathway	GO:0006984		2.793E-04	0.07137757
insulin receptor signaling pathway	GO:0008286		3.045E-04	0.07003439
fat cell differentiation	GO:0045444		3.045E-04	0.06366763

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		3.923E-06	9.583E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	0.01026679
phosphoinositide-mediated signaling	GO:0048015		1.002E-05	8.163E-03
UV protection	GO:0009650		1.649E-05	0.01007325
nucleotide-excision repair. DNA gap filling	GO:0006297		3.592E-05	0.01755274
cellular response to unfolded protein	GO:0034620		5.68E-05	0.02312862
response to endoplasmic reticulum stress	GO:0034976		9.697E-05	0.03384178
insulin receptor signaling pathway	GO:0008286		1.047E-04	0.03196969
epidermal growth factor receptor signaling pathway	GO:0007173		1.127E-04	0.03059313
fat cell differentiation	GO:0045444		1.127E-04	0.02753382
base-excision repair	GO:0006284		1.127E-04	0.02503074

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		5.743E-06	0.01381855
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	0.01407861
phosphoinositide-mediated signaling	GO:0048015		1.64E-05	0.01315413
UV protection	GO:0009650		2.296E-05	0.01381069
nucleotide-excision repair. DNA gap filling	GO:0006297		5E-05	0.02405795
cellular response to unfolded protein	GO:0034620		7.116E-05	0.02853469
response to endoplasmic reticulum stress	GO:0034976		1.245E-04	0.04280687
insulin receptor signaling pathway	GO:0008286		1.349E-04	0.04056119
epidermal growth factor receptor signaling pathway	GO:0007173		1.456E-04	0.03892323
fat cell differentiation	GO:0045444		1.456E-04	0.03503091
base-excision repair	GO:0006284		1.456E-04	0.03184628

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		3.923E-06	9.583E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	0.01026679
phosphoinositide-mediated signaling	GO:0048015		1.002E-05	8.163E-03
UV protection	GO:0009650		1.649E-05	0.01007325
nucleotide-excision repair. DNA gap filling	GO:0006297		3.592E-05	0.01755274
cellular response to unfolded protein	GO:0034620		5.68E-05	0.02312862
response to endoplasmic reticulum stress	GO:0034976		9.697E-05	0.03384178
insulin receptor signaling pathway	GO:0008286		1.047E-04	0.03196969
epidermal growth factor receptor signaling pathway	GO:0007173		1.127E-04	0.03059313
fat cell differentiation	GO:0045444		1.127E-04	0.02753382
base-excision repair	GO:0006284		1.127E-04	0.02503074

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		5.743E-06	0.01381855
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	0.01407861
phosphoinositide-mediated signaling	GO:0048015		1.64E-05	0.01315413
UV protection	GO:0009650		2.296E-05	0.01381069
nucleotide-excision repair. DNA gap filling	GO:0006297		5E-05	0.02405795
cellular response to unfolded protein	GO:0034620		7.116E-05	0.02853469
response to endoplasmic reticulum stress	GO:0034976		1.245E-04	0.04280687
insulin receptor signaling pathway	GO:0008286		1.349E-04	0.04056119
epidermal growth factor receptor signaling pathway	GO:0007173		1.456E-04	0.03892323
fat cell differentiation	GO:0045444		1.456E-04	0.03503091
base-excision repair	GO:0006284		1.456E-04	0.03184628

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		5.743E-06	0.01381855
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	0.01407861
phosphoinositide-mediated signaling	GO:0048015		1.64E-05	0.01315413
UV protection	GO:0009650		2.296E-05	0.01381069
nucleotide-excision repair. DNA gap filling	GO:0006297		5E-05	0.02405795
cellular response to unfolded protein	GO:0034620		7.116E-05	0.02853469
response to endoplasmic reticulum stress	GO:0034976		1.245E-04	0.04280687
insulin receptor signaling pathway	GO:0008286		1.349E-04	0.04056119
epidermal growth factor receptor signaling pathway	GO:0007173		1.456E-04	0.03892323
fat cell differentiation	GO:0045444		1.456E-04	0.03503091
base-excision repair	GO:0006284		1.456E-04	0.03184628

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		1.604E-05	0.03689356
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.02693876
UV protection	GO:0009650		5.01E-05	0.03840915
phosphoinositide-mediated signaling	GO:0048015		5.937E-05	0.03413632
cellular response to unfolded protein	GO:0034620		1.331E-04	0.06121606
nucleotide-excision repair. DNA gap filling	GO:0006297		1.331E-04	0.05101339
response to light stimulus	GO:0009416		1.459E-04	0.04793355
response to endoplasmic reticulum stress	GO:0034976		2.321E-04	0.06673843
ER-nuclear signaling pathway	GO:0006984		2.793E-04	0.07137757
insulin receptor signaling pathway	GO:0008286		3.045E-04	0.07003439
fat cell differentiation	GO:0045444		3.045E-04	0.06366763

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		1.604E-05	0.03689356
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.02693876
UV protection	GO:0009650		5.01E-05	0.03840915
phosphoinositide-mediated signaling	GO:0048015		5.937E-05	0.03413632
cellular response to unfolded protein	GO:0034620		1.331E-04	0.06121606
nucleotide-excision repair. DNA gap filling	GO:0006297		1.331E-04	0.05101339
response to light stimulus	GO:0009416		1.459E-04	0.04793355
response to endoplasmic reticulum stress	GO:0034976		2.321E-04	0.06673843
ER-nuclear signaling pathway	GO:0006984		2.793E-04	0.07137757
insulin receptor signaling pathway	GO:0008286		3.045E-04	0.07003439
fat cell differentiation	GO:0045444		3.045E-04	0.06366763

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		1.604E-05	0.03689356
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.02693876
UV protection	GO:0009650		5.01E-05	0.03840915
phosphoinositide-mediated signaling	GO:0048015		5.937E-05	0.03413632
cellular response to unfolded protein	GO:0034620		1.331E-04	0.06121606
nucleotide-excision repair. DNA gap filling	GO:0006297		1.331E-04	0.05101339
response to light stimulus	GO:0009416		1.459E-04	0.04793355
response to endoplasmic reticulum stress	GO:0034976		2.321E-04	0.06673843
ER-nuclear signaling pathway	GO:0006984		2.793E-04	0.07137757
insulin receptor signaling pathway	GO:0008286		3.045E-04	0.07003439
fat cell differentiation	GO:0045444		3.045E-04	0.06366763

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		1.604E-05	0.03689356
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.02693876
UV protection	GO:0009650		5.01E-05	0.03840915
phosphoinositide-mediated signaling	GO:0048015		5.937E-05	0.03413632
cellular response to unfolded protein	GO:0034620		1.331E-04	0.06121606
nucleotide-excision repair. DNA gap filling	GO:0006297		1.331E-04	0.05101339
response to light stimulus	GO:0009416		1.459E-04	0.04793355
response to endoplasmic reticulum stress	GO:0034976		2.321E-04	0.06673843
ER-nuclear signaling pathway	GO:0006984		2.793E-04	0.07137757
insulin receptor signaling pathway	GO:0008286		3.045E-04	0.07003439
fat cell differentiation	GO:0045444		3.045E-04	0.06366763