Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6993-8-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1684	9.226e-03	2.895e-03	5.461e-02
IPC-NIBC-129	0.1880	4.621e-02	3.659e-02	2.226e-01
Ivshina_GPL96-GPL97	0.2506	4.057e-02	3.139e-02	3.799e-01
Loi_GPL570	0.2791	1.395e-01	1.701e-01	4.760e-01
Loi_GPL96-GPL97	0.1946	1.095e-02	5.552e-03	1.475e-01
Pawitan_GPL96-GPL97	0.3149	1.066e-01	5.910e-02	5.158e-01
Schmidt	0.1849	2.506e-02	2.664e-02	1.626e-01
Sotiriou	0.2701	6.940e-02	2.484e-02	4.543e-01
Wang	0.1220	1.787e-01	1.720e-01	4.504e-01
Zhang	0.2489	8.370e-03	4.173e-03	4.041e-02

Expression data for subnetwork 6993-8-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 6993-8-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
dynlt1		1	90	175	181	-0.029	0.190	0.104	0.126	0.051	0.052	-0.001	-0.095	-0.047	0.105
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
dync1i1		3	39	45	38	-0.058	0.102	0.055	0.124	0.054	0.056	0.082	0.036	0.119	0.166
pttg1		4	27	173	150	0.072	0.270	0.175	0.183	0.200	0.334	0.224	0.204	0.147	0.210
krt18		13	12	99	67	0.112	-0.078	0.147	0.150	0.161	0.083	-0.099	0.118	0.086	-0.114
troap		4	27	167	139	0.078	0.179	0.137	0.149	0.119	0.144	0.284	0.117	0.050	0.242
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 6993-8-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
post-Golgi vesicle-mediated transport	GO:0006892		4.484E-05	0.03437658
microtubule-based transport	GO:0010970		5.565E-05	0.03199786
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.02828421
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.02837913
fat cell differentiation	GO:0045444		8.074E-05	0.02652823
regulation of Rab protein signal transduction	GO:0032483		1.735E-04	0.04987308
response to calcium ion	GO:0051592		2.271E-04	0.05802679
cytoskeleton-dependent intracellular transport	GO:0030705		2.271E-04	0.05222411
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.05491283

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		2.192E-06	5.355E-03
Golgi to plasma membrane transport	GO:0006893		2.192E-06	2.678E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	2.38E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	0.01208382
microtubule-based transport	GO:0010970		2.405E-05	0.0117487
post-Golgi vesicle-mediated transport	GO:0006892		2.872E-05	0.01169345
response to endoplasmic reticulum stress	GO:0034976		3.381E-05	0.01179797
fat cell differentiation	GO:0045444		3.93E-05	0.0120022
ER-nuclear signaling pathway	GO:0006984		4.221E-05	0.01145674
cytoskeleton-dependent intracellular transport	GO:0030705		9.363E-05	0.02287308
G1/S transition of mitotic cell cycle	GO:0000082		1.073E-04	0.02381992

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		2.082E-06	5.009E-03
Golgi to plasma membrane transport	GO:0006893		2.082E-06	2.505E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	2.226E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.01017554
microtubule-based transport	GO:0010970		2.284E-05	0.01099089
post-Golgi vesicle-mediated transport	GO:0006892		2.728E-05	0.01093943
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.01019021
fat cell differentiation	GO:0045444		3.468E-05	0.01042853
ER-nuclear signaling pathway	GO:0006984		3.734E-05	9.981E-03
cytoskeleton-dependent intracellular transport	GO:0030705		8.483E-05	0.02041058
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.02228908

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		2.192E-06	5.355E-03
Golgi to plasma membrane transport	GO:0006893		2.192E-06	2.678E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	2.38E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	0.01208382
microtubule-based transport	GO:0010970		2.405E-05	0.0117487
post-Golgi vesicle-mediated transport	GO:0006892		2.872E-05	0.01169345
response to endoplasmic reticulum stress	GO:0034976		3.381E-05	0.01179797
fat cell differentiation	GO:0045444		3.93E-05	0.0120022
ER-nuclear signaling pathway	GO:0006984		4.221E-05	0.01145674
cytoskeleton-dependent intracellular transport	GO:0030705		9.363E-05	0.02287308
G1/S transition of mitotic cell cycle	GO:0000082		1.073E-04	0.02381992

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		2.082E-06	5.009E-03
Golgi to plasma membrane transport	GO:0006893		2.082E-06	2.505E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	2.226E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.01017554
microtubule-based transport	GO:0010970		2.284E-05	0.01099089
post-Golgi vesicle-mediated transport	GO:0006892		2.728E-05	0.01093943
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.01019021
fat cell differentiation	GO:0045444		3.468E-05	0.01042853
ER-nuclear signaling pathway	GO:0006984		3.734E-05	9.981E-03
cytoskeleton-dependent intracellular transport	GO:0030705		8.483E-05	0.02041058
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.02228908

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		2.082E-06	5.009E-03
Golgi to plasma membrane transport	GO:0006893		2.082E-06	2.505E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	2.226E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.01017554
microtubule-based transport	GO:0010970		2.284E-05	0.01099089
post-Golgi vesicle-mediated transport	GO:0006892		2.728E-05	0.01093943
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.01019021
fat cell differentiation	GO:0045444		3.468E-05	0.01042853
ER-nuclear signaling pathway	GO:0006984		3.734E-05	9.981E-03
cytoskeleton-dependent intracellular transport	GO:0030705		8.483E-05	0.02041058
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.02228908

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
post-Golgi vesicle-mediated transport	GO:0006892		4.484E-05	0.03437658
microtubule-based transport	GO:0010970		5.565E-05	0.03199786
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.02828421
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.02837913
fat cell differentiation	GO:0045444		8.074E-05	0.02652823
regulation of Rab protein signal transduction	GO:0032483		1.735E-04	0.04987308
response to calcium ion	GO:0051592		2.271E-04	0.05802679
cytoskeleton-dependent intracellular transport	GO:0030705		2.271E-04	0.05222411
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.05491283

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
post-Golgi vesicle-mediated transport	GO:0006892		4.484E-05	0.03437658
microtubule-based transport	GO:0010970		5.565E-05	0.03199786
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.02828421
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.02837913
fat cell differentiation	GO:0045444		8.074E-05	0.02652823
regulation of Rab protein signal transduction	GO:0032483		1.735E-04	0.04987308
response to calcium ion	GO:0051592		2.271E-04	0.05802679
cytoskeleton-dependent intracellular transport	GO:0030705		2.271E-04	0.05222411
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.05491283

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
post-Golgi vesicle-mediated transport	GO:0006892		4.484E-05	0.03437658
microtubule-based transport	GO:0010970		5.565E-05	0.03199786
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.02828421
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.02837913
fat cell differentiation	GO:0045444		8.074E-05	0.02652823
regulation of Rab protein signal transduction	GO:0032483		1.735E-04	0.04987308
response to calcium ion	GO:0051592		2.271E-04	0.05802679
cytoskeleton-dependent intracellular transport	GO:0030705		2.271E-04	0.05222411
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.05491283

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
post-Golgi vesicle-mediated transport	GO:0006892		4.484E-05	0.03437658
microtubule-based transport	GO:0010970		5.565E-05	0.03199786
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.02828421
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.02837913
fat cell differentiation	GO:0045444		8.074E-05	0.02652823
regulation of Rab protein signal transduction	GO:0032483		1.735E-04	0.04987308
response to calcium ion	GO:0051592		2.271E-04	0.05802679
cytoskeleton-dependent intracellular transport	GO:0030705		2.271E-04	0.05222411
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.05491283