Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6428-8-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1352	1.165e-02	3.982e-03	6.575e-02
IPC-NIBC-129	0.2321	1.194e-01	1.074e-01	4.933e-01
Ivshina_GPL96-GPL97	0.2395	1.699e-02	1.135e-02	1.963e-01
Loi_GPL570	0.2036	8.811e-02	1.116e-01	3.463e-01
Loi_GPL96-GPL97	0.2265	3.864e-02	2.932e-02	4.795e-01
Pawitan_GPL96-GPL97	0.3200	2.012e-01	1.333e-01	7.238e-01
Schmidt	0.2201	3.703e-02	3.902e-02	2.236e-01
Sotiriou	0.2453	4.126e-02	1.180e-02	3.153e-01
Wang	0.1177	1.921e-01	1.877e-01	4.722e-01
Zhang	0.1891	7.681e-03	3.791e-03	3.765e-02

Expression data for subnetwork 6428-8-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 6428-8-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
sfrs3		1	90	224	229	-0.089	0.148	0.132	0.066	0.078	-0.008	0.168	0.102	0.016	0.102
srpk1		3	39	122	104	0.013	0.261	0.105	0.234	0.112	0.144	0.241	0.115	0.116	0.050
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
krt18		13	12	99	67	0.112	-0.078	0.147	0.150	0.161	0.083	-0.099	0.118	0.086	-0.114
ccnb1		33	4	68	40	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.152	0.167

GO Enrichment output for subnetwork 6428-8-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		4.314E-06	9.923E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	4.962E-03
DNA topological change	GO:0006265		6.469E-06	4.96E-03
chromosome segregation	GO:0007059		7.081E-06	4.071E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		8.696E-06	4E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.135E-06	3.502E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.054E-05	3.462E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.054E-05	3.03E-03
positive regulation of ligase activity	GO:0051351		1.262E-05	3.225E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.376E-05	3.164E-03
DNA ligation	GO:0006266		1.551E-05	3.243E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		1.898E-06	4.637E-03
regulation of retroviral genome replication	GO:0045091		2.847E-06	3.477E-03
chromosome segregation	GO:0007059		3.522E-06	2.868E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		3.684E-06	2.25E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.85E-06	1.881E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		3.984E-06	1.622E-03
Golgi to plasma membrane transport	GO:0006893		3.984E-06	1.39E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		4.379E-06	1.337E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		4.379E-06	1.189E-03
DNA topological change	GO:0006265		5.311E-06	1.297E-03
positive regulation of ligase activity	GO:0051351		5.364E-06	1.191E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		2.644E-06	6.361E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	3.18E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		5.548E-06	4.45E-03
Golgi to plasma membrane transport	GO:0006893		5.548E-06	3.337E-03
chromosome segregation	GO:0007059		5.772E-06	2.777E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.036E-06	2.421E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.309E-06	2.168E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.174E-06	2.158E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.174E-06	1.918E-03
DNA topological change	GO:0006265		7.395E-06	1.779E-03
positive regulation of ligase activity	GO:0051351		8.785E-06	1.922E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		1.898E-06	4.637E-03
regulation of retroviral genome replication	GO:0045091		2.847E-06	3.477E-03
chromosome segregation	GO:0007059		3.522E-06	2.868E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		3.684E-06	2.25E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.85E-06	1.881E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		3.984E-06	1.622E-03
Golgi to plasma membrane transport	GO:0006893		3.984E-06	1.39E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		4.379E-06	1.337E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		4.379E-06	1.189E-03
DNA topological change	GO:0006265		5.311E-06	1.297E-03
positive regulation of ligase activity	GO:0051351		5.364E-06	1.191E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		2.644E-06	6.361E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	3.18E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		5.548E-06	4.45E-03
Golgi to plasma membrane transport	GO:0006893		5.548E-06	3.337E-03
chromosome segregation	GO:0007059		5.772E-06	2.777E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.036E-06	2.421E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.309E-06	2.168E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.174E-06	2.158E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.174E-06	1.918E-03
DNA topological change	GO:0006265		7.395E-06	1.779E-03
positive regulation of ligase activity	GO:0051351		8.785E-06	1.922E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		2.644E-06	6.361E-03
regulation of retroviral genome replication	GO:0045091		2.644E-06	3.18E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		5.548E-06	4.45E-03
Golgi to plasma membrane transport	GO:0006893		5.548E-06	3.337E-03
chromosome segregation	GO:0007059		5.772E-06	2.777E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		6.036E-06	2.421E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		6.309E-06	2.168E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		7.174E-06	2.158E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		7.174E-06	1.918E-03
DNA topological change	GO:0006265		7.395E-06	1.779E-03
positive regulation of ligase activity	GO:0051351		8.785E-06	1.922E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		4.314E-06	9.923E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	4.962E-03
DNA topological change	GO:0006265		6.469E-06	4.96E-03
chromosome segregation	GO:0007059		7.081E-06	4.071E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		8.696E-06	4E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.135E-06	3.502E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.054E-05	3.462E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.054E-05	3.03E-03
positive regulation of ligase activity	GO:0051351		1.262E-05	3.225E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.376E-05	3.164E-03
DNA ligation	GO:0006266		1.551E-05	3.243E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		4.314E-06	9.923E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	4.962E-03
DNA topological change	GO:0006265		6.469E-06	4.96E-03
chromosome segregation	GO:0007059		7.081E-06	4.071E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		8.696E-06	4E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.135E-06	3.502E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.054E-05	3.462E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.054E-05	3.03E-03
positive regulation of ligase activity	GO:0051351		1.262E-05	3.225E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.376E-05	3.164E-03
DNA ligation	GO:0006266		1.551E-05	3.243E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		4.314E-06	9.923E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	4.962E-03
DNA topological change	GO:0006265		6.469E-06	4.96E-03
chromosome segregation	GO:0007059		7.081E-06	4.071E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		8.696E-06	4E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.135E-06	3.502E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.054E-05	3.462E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.054E-05	3.03E-03
positive regulation of ligase activity	GO:0051351		1.262E-05	3.225E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.376E-05	3.164E-03
DNA ligation	GO:0006266		1.551E-05	3.243E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		4.314E-06	9.923E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	4.962E-03
DNA topological change	GO:0006265		6.469E-06	4.96E-03
chromosome segregation	GO:0007059		7.081E-06	4.071E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		8.696E-06	4E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.135E-06	3.502E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.054E-05	3.462E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.054E-05	3.03E-03
positive regulation of ligase activity	GO:0051351		1.262E-05	3.225E-03
regulation of ubiquitin-protein ligase activity	GO:0051438		1.376E-05	3.164E-03
DNA ligation	GO:0006266		1.551E-05	3.243E-03