Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 6198-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1561 | 1.291e-02 | 4.580e-03 | 7.131e-02 |
|---|
| IPC-NIBC-129 | 0.2253 | 6.280e-02 | 5.189e-02 | 2.942e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2346 | 1.945e-02 | 1.330e-02 | 2.192e-01 |
|---|
| Loi_GPL570 | 0.2550 | 1.505e-01 | 1.822e-01 | 4.999e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2169 | 1.762e-02 | 1.047e-02 | 2.436e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3335 | 5.958e-02 | 2.802e-02 | 3.508e-01 |
|---|
| Schmidt | 0.1791 | 1.313e-02 | 1.416e-02 | 9.279e-02 |
|---|
| Sotiriou | 0.3108 | 4.827e-02 | 1.478e-02 | 3.539e-01 |
|---|
| Wang | 0.1603 | 9.414e-02 | 7.805e-02 | 2.887e-01 |
|---|
| Zhang | 0.3023 | 6.116e-03 | 2.940e-03 | 3.120e-02 |
|---|
Expression data for subnetwork 6198-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 6198-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| rps6kb1 | | 2 | 53 | 83 | 73 | -0.048 | 0.004 | 0.033 | 0.144 | 0.128 | 0.022 | 0.116 | 0.084 | 0.184 | 0.076 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 6198-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 1.754E-07 | 4.035E-04 |
|---|
| interphase | GO:0051325 | | 1.925E-07 | 2.214E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.068E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 1.654E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.796E-06 | 1.455E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 2.148E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 1.975E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 1.928E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 1.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 1.657E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.245E-08 | 1.77E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 1.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.661E-06 | 1.353E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.755E-06 | 1.072E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.491E-06 | 1.217E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 1.22E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.133E-06 | 1.093E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.563E-06 | 1.088E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.563E-06 | 9.672E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.365E-06 | 1.066E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.648E-06 | 1.032E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.076E-08 | 2.184E-04 |
|---|
| interphase | GO:0051325 | | 1.029E-07 | 1.238E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.2E-06 | 9.62E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.005E-06 | 1.206E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.005E-06 | 9.648E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.305E-06 | 9.244E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.936E-06 | 1.353E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 4.114E-06 | 1.237E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.679E-06 | 1.251E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.679E-06 | 1.126E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.61E-06 | 1.227E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.245E-08 | 1.77E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 1.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.661E-06 | 1.353E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.755E-06 | 1.072E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.491E-06 | 1.217E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 1.22E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.133E-06 | 1.093E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.563E-06 | 1.088E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.563E-06 | 9.672E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.365E-06 | 1.066E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.648E-06 | 1.032E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.076E-08 | 2.184E-04 |
|---|
| interphase | GO:0051325 | | 1.029E-07 | 1.238E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.2E-06 | 9.62E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.005E-06 | 1.206E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.005E-06 | 9.648E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.305E-06 | 9.244E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.936E-06 | 1.353E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 4.114E-06 | 1.237E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.679E-06 | 1.251E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.679E-06 | 1.126E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.61E-06 | 1.227E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.076E-08 | 2.184E-04 |
|---|
| interphase | GO:0051325 | | 1.029E-07 | 1.238E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.2E-06 | 9.62E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.005E-06 | 1.206E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.005E-06 | 9.648E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.305E-06 | 9.244E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.936E-06 | 1.353E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 4.114E-06 | 1.237E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.679E-06 | 1.251E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.679E-06 | 1.126E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.61E-06 | 1.227E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.754E-07 | 4.035E-04 |
|---|
| interphase | GO:0051325 | | 1.925E-07 | 2.214E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.068E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 1.654E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.796E-06 | 1.455E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 2.148E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 1.975E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 1.928E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 1.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 1.657E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.754E-07 | 4.035E-04 |
|---|
| interphase | GO:0051325 | | 1.925E-07 | 2.214E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.068E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 1.654E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.796E-06 | 1.455E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 2.148E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 1.975E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 1.928E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 1.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 1.657E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.754E-07 | 4.035E-04 |
|---|
| interphase | GO:0051325 | | 1.925E-07 | 2.214E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.068E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 1.654E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.796E-06 | 1.455E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 2.148E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 1.975E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 1.928E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 1.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 1.657E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.754E-07 | 4.035E-04 |
|---|
| interphase | GO:0051325 | | 1.925E-07 | 2.214E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.068E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 1.654E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.796E-06 | 1.455E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 2.148E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 1.975E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 1.928E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 1.736E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 1.657E-03 |
|---|
