Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5999-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2129	9.655e-03	3.081e-03	5.663e-02
IPC-NIBC-129	0.2428	4.363e-02	3.426e-02	2.108e-01
Ivshina_GPL96-GPL97	0.2485	1.373e-02	8.838e-03	1.641e-01
Loi_GPL570	0.2837	1.456e-01	1.768e-01	4.893e-01
Loi_GPL96-GPL97	0.1524	1.822e-03	4.860e-04	1.379e-02
Pawitan_GPL96-GPL97	0.2914	1.251e-01	7.253e-02	5.667e-01
Schmidt	0.1817	1.360e-02	1.466e-02	9.578e-02
Sotiriou	0.3086	1.363e-01	6.509e-02	6.695e-01
Wang	0.2030	4.540e-02	3.098e-02	1.673e-01
Zhang	0.2341	1.244e-02	6.500e-03	5.584e-02

Expression data for subnetwork 5999-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5999-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
calm1		16	10	35	19	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.087	0.162
pcp4		5	20	35	25	0.022	0.163	0.112	0.140	0.114	-0.002	0.096	0.117	0.104	0.109
tpx2		2	53	84	76	0.125	0.234	0.143	0.235	0.185	0.317	0.210	0.209	0.028	0.103
hmmr		10	14	35	23	0.112	0.310	0.147	0.127	0.145	0.221	0.179	0.233	0.227	0.144
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
rgs4		2	53	84	76	0.135	0.121	0.127	0.053	0.072	0.007	0.015	0.035	0.201	0.113

GO Enrichment output for subnetwork 5999-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	0.03310794
cellular response to unfolded protein	GO:0034620		8.189E-05	0.09417293
inactivation of MAPK activity	GO:0000188		9.276E-05	0.07111761
response to endoplasmic reticulum stress	GO:0034976		1.43E-04	0.0821973
ER-nuclear signaling pathway	GO:0006984		1.721E-04	0.07914403
fat cell differentiation	GO:0045444		1.876E-04	0.07191346
negative regulation of MAP kinase activity	GO:0043407		2.564E-04	0.08425293
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		4.999E-04	0.14373142
response to calcium ion	GO:0051592		5.26E-04	0.13441891
G1/S transition of mitotic cell cycle	GO:0000082		6.08E-04	0.13984611
positive regulation of cell cycle	GO:0045787		6.659E-04	0.13924343

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	0.01848231
cellular response to unfolded protein	GO:0034620		5.114E-05	0.06246836
inactivation of MAPK activity	GO:0000188		6.214E-05	0.05059997
response to endoplasmic reticulum stress	GO:0034976		8.731E-05	0.05332479
fat cell differentiation	GO:0045444		1.015E-04	0.04958504
ER-nuclear signaling pathway	GO:0006984		1.09E-04	0.04436753
negative regulation of MAP kinase activity	GO:0043407		1.503E-04	0.05246421
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		2.527E-04	0.07716411
G1/S transition of mitotic cell cycle	GO:0000082		2.763E-04	0.0749955
positive regulation of cell cycle	GO:0045787		3.009E-04	0.07351394
response to calcium ion	GO:0051592		3.136E-04	0.06965252

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	0.02016268
cellular response to unfolded protein	GO:0034620		5.099E-05	0.0613437
inactivation of MAPK activity	GO:0000188		6.258E-05	0.05018957
response to endoplasmic reticulum stress	GO:0034976		8.928E-05	0.05370318
fat cell differentiation	GO:0045444		1.044E-04	0.05023281
ER-nuclear signaling pathway	GO:0006984		1.124E-04	0.04506576
negative regulation of MAP kinase activity	GO:0043407		1.473E-04	0.05061895
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		2.671E-04	0.08034181
G1/S transition of mitotic cell cycle	GO:0000082		3.059E-04	0.08177288
response to calcium ion	GO:0051592		3.194E-04	0.076841
positive regulation of cell cycle	GO:0045787		3.331E-04	0.07286846

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	0.01848231
cellular response to unfolded protein	GO:0034620		5.114E-05	0.06246836
inactivation of MAPK activity	GO:0000188		6.214E-05	0.05059997
response to endoplasmic reticulum stress	GO:0034976		8.731E-05	0.05332479
fat cell differentiation	GO:0045444		1.015E-04	0.04958504
ER-nuclear signaling pathway	GO:0006984		1.09E-04	0.04436753
negative regulation of MAP kinase activity	GO:0043407		1.503E-04	0.05246421
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		2.527E-04	0.07716411
G1/S transition of mitotic cell cycle	GO:0000082		2.763E-04	0.0749955
positive regulation of cell cycle	GO:0045787		3.009E-04	0.07351394
response to calcium ion	GO:0051592		3.136E-04	0.06965252

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	0.02016268
cellular response to unfolded protein	GO:0034620		5.099E-05	0.0613437
inactivation of MAPK activity	GO:0000188		6.258E-05	0.05018957
response to endoplasmic reticulum stress	GO:0034976		8.928E-05	0.05370318
fat cell differentiation	GO:0045444		1.044E-04	0.05023281
ER-nuclear signaling pathway	GO:0006984		1.124E-04	0.04506576
negative regulation of MAP kinase activity	GO:0043407		1.473E-04	0.05061895
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		2.671E-04	0.08034181
G1/S transition of mitotic cell cycle	GO:0000082		3.059E-04	0.08177288
response to calcium ion	GO:0051592		3.194E-04	0.076841
positive regulation of cell cycle	GO:0045787		3.331E-04	0.07286846

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	0.02016268
cellular response to unfolded protein	GO:0034620		5.099E-05	0.0613437
inactivation of MAPK activity	GO:0000188		6.258E-05	0.05018957
response to endoplasmic reticulum stress	GO:0034976		8.928E-05	0.05370318
fat cell differentiation	GO:0045444		1.044E-04	0.05023281
ER-nuclear signaling pathway	GO:0006984		1.124E-04	0.04506576
negative regulation of MAP kinase activity	GO:0043407		1.473E-04	0.05061895
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		2.671E-04	0.08034181
G1/S transition of mitotic cell cycle	GO:0000082		3.059E-04	0.08177288
response to calcium ion	GO:0051592		3.194E-04	0.076841
positive regulation of cell cycle	GO:0045787		3.331E-04	0.07286846

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	0.03310794
cellular response to unfolded protein	GO:0034620		8.189E-05	0.09417293
inactivation of MAPK activity	GO:0000188		9.276E-05	0.07111761
response to endoplasmic reticulum stress	GO:0034976		1.43E-04	0.0821973
ER-nuclear signaling pathway	GO:0006984		1.721E-04	0.07914403
fat cell differentiation	GO:0045444		1.876E-04	0.07191346
negative regulation of MAP kinase activity	GO:0043407		2.564E-04	0.08425293
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		4.999E-04	0.14373142
response to calcium ion	GO:0051592		5.26E-04	0.13441891
G1/S transition of mitotic cell cycle	GO:0000082		6.08E-04	0.13984611
positive regulation of cell cycle	GO:0045787		6.659E-04	0.13924343

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	0.03310794
cellular response to unfolded protein	GO:0034620		8.189E-05	0.09417293
inactivation of MAPK activity	GO:0000188		9.276E-05	0.07111761
response to endoplasmic reticulum stress	GO:0034976		1.43E-04	0.0821973
ER-nuclear signaling pathway	GO:0006984		1.721E-04	0.07914403
fat cell differentiation	GO:0045444		1.876E-04	0.07191346
negative regulation of MAP kinase activity	GO:0043407		2.564E-04	0.08425293
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		4.999E-04	0.14373142
response to calcium ion	GO:0051592		5.26E-04	0.13441891
G1/S transition of mitotic cell cycle	GO:0000082		6.08E-04	0.13984611
positive regulation of cell cycle	GO:0045787		6.659E-04	0.13924343

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	0.03310794
cellular response to unfolded protein	GO:0034620		8.189E-05	0.09417293
inactivation of MAPK activity	GO:0000188		9.276E-05	0.07111761
response to endoplasmic reticulum stress	GO:0034976		1.43E-04	0.0821973
ER-nuclear signaling pathway	GO:0006984		1.721E-04	0.07914403
fat cell differentiation	GO:0045444		1.876E-04	0.07191346
negative regulation of MAP kinase activity	GO:0043407		2.564E-04	0.08425293
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		4.999E-04	0.14373142
response to calcium ion	GO:0051592		5.26E-04	0.13441891
G1/S transition of mitotic cell cycle	GO:0000082		6.08E-04	0.13984611
positive regulation of cell cycle	GO:0045787		6.659E-04	0.13924343

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	0.03310794
cellular response to unfolded protein	GO:0034620		8.189E-05	0.09417293
inactivation of MAPK activity	GO:0000188		9.276E-05	0.07111761
response to endoplasmic reticulum stress	GO:0034976		1.43E-04	0.0821973
ER-nuclear signaling pathway	GO:0006984		1.721E-04	0.07914403
fat cell differentiation	GO:0045444		1.876E-04	0.07191346
negative regulation of MAP kinase activity	GO:0043407		2.564E-04	0.08425293
regulation of G-protein coupled receptor protein signaling pathway	GO:0008277		4.999E-04	0.14373142
response to calcium ion	GO:0051592		5.26E-04	0.13441891
G1/S transition of mitotic cell cycle	GO:0000082		6.08E-04	0.13984611
positive regulation of cell cycle	GO:0045787		6.659E-04	0.13924343