Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5985-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1507	2.768e-02	1.289e-02	1.288e-01
IPC-NIBC-129	0.1815	8.079e-02	6.907e-02	3.646e-01
Ivshina_GPL96-GPL97	0.1979	4.606e-02	3.638e-02	4.138e-01
Loi_GPL570	0.2350	8.310e-02	1.057e-01	3.318e-01
Loi_GPL96-GPL97	0.1906	2.169e-02	1.377e-02	2.971e-01
Pawitan_GPL96-GPL97	0.3343	1.295e-01	7.584e-02	5.780e-01
Schmidt	0.2245	3.615e-02	3.810e-02	2.193e-01
Sotiriou	0.2469	7.408e-02	2.727e-02	4.738e-01
Wang	0.2060	4.308e-02	2.897e-02	1.607e-01
Zhang	0.2308	6.035e-03	2.896e-03	3.086e-02

Expression data for subnetwork 5985-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5985-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
rfc5		1	90	197	197	-0.019	-0.045	0.005	0.060	0.147	0.061	0.115	0.094	0.172	0.039
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
ccnb1		33	4	68	40	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.152	0.167
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5985-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	2.981E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	2.757E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	2.068E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.853E-03
chromosome segregation	GO:0007059		5.323E-06	2.04E-03
DNA topological change	GO:0006265		5.392E-06	1.772E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	2.169E-03
phosphoinositide-mediated signaling	GO:0048015		1.035E-05	2.644E-03
DNA ligation	GO:0006266		1.293E-05	2.973E-03
positive regulation of viral reproduction	GO:0048524		1.615E-05	3.377E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.134E-08	5.214E-05
positive regulation of cell cycle	GO:0045787		6.547E-07	7.998E-04
nucleotide-excision repair	GO:0006289		1.106E-06	9.003E-04
positive regulation of viral genome replication	GO:0045070		1.234E-06	7.537E-04
meiotic chromosome segregation	GO:0045132		1.234E-06	6.03E-04
chromosome segregation	GO:0007059		1.806E-06	7.354E-04
regulation of retroviral genome replication	GO:0045091		1.851E-06	6.459E-04
establishment of spindle localization	GO:0051293		1.851E-06	5.652E-04
phosphoinositide-mediated signaling	GO:0048015		2.542E-06	6.899E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.453E-06	8.436E-04
DNA topological change	GO:0006265		3.453E-06	7.669E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.507E-08	8.437E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	1.293E-03
nucleotide-excision repair	GO:0006289		1.719E-06	1.378E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.034E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	8.27E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	6.892E-04
establishment of spindle localization	GO:0051293		2.577E-06	8.859E-04
chromosome segregation	GO:0007059		2.962E-06	8.908E-04
phosphoinositide-mediated signaling	GO:0048015		4.167E-06	1.114E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.157E-03
DNA topological change	GO:0006265		4.809E-06	1.052E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.134E-08	5.214E-05
positive regulation of cell cycle	GO:0045787		6.547E-07	7.998E-04
nucleotide-excision repair	GO:0006289		1.106E-06	9.003E-04
positive regulation of viral genome replication	GO:0045070		1.234E-06	7.537E-04
meiotic chromosome segregation	GO:0045132		1.234E-06	6.03E-04
chromosome segregation	GO:0007059		1.806E-06	7.354E-04
regulation of retroviral genome replication	GO:0045091		1.851E-06	6.459E-04
establishment of spindle localization	GO:0051293		1.851E-06	5.652E-04
phosphoinositide-mediated signaling	GO:0048015		2.542E-06	6.899E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.453E-06	8.436E-04
DNA topological change	GO:0006265		3.453E-06	7.669E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.507E-08	8.437E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	1.293E-03
nucleotide-excision repair	GO:0006289		1.719E-06	1.378E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.034E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	8.27E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	6.892E-04
establishment of spindle localization	GO:0051293		2.577E-06	8.859E-04
chromosome segregation	GO:0007059		2.962E-06	8.908E-04
phosphoinositide-mediated signaling	GO:0048015		4.167E-06	1.114E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.157E-03
DNA topological change	GO:0006265		4.809E-06	1.052E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.507E-08	8.437E-05
positive regulation of cell cycle	GO:0045787		1.074E-06	1.293E-03
nucleotide-excision repair	GO:0006289		1.719E-06	1.378E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.034E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	8.27E-04
meiotic chromosome segregation	GO:0045132		1.719E-06	6.892E-04
establishment of spindle localization	GO:0051293		2.577E-06	8.859E-04
chromosome segregation	GO:0007059		2.962E-06	8.908E-04
phosphoinositide-mediated signaling	GO:0048015		4.167E-06	1.114E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.157E-03
DNA topological change	GO:0006265		4.809E-06	1.052E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	2.981E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	2.757E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	2.068E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.853E-03
chromosome segregation	GO:0007059		5.323E-06	2.04E-03
DNA topological change	GO:0006265		5.392E-06	1.772E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	2.169E-03
phosphoinositide-mediated signaling	GO:0048015		1.035E-05	2.644E-03
DNA ligation	GO:0006266		1.293E-05	2.973E-03
positive regulation of viral reproduction	GO:0048524		1.615E-05	3.377E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	2.981E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	2.757E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	2.068E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.853E-03
chromosome segregation	GO:0007059		5.323E-06	2.04E-03
DNA topological change	GO:0006265		5.392E-06	1.772E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	2.169E-03
phosphoinositide-mediated signaling	GO:0048015		1.035E-05	2.644E-03
DNA ligation	GO:0006266		1.293E-05	2.973E-03
positive regulation of viral reproduction	GO:0048524		1.615E-05	3.377E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	2.981E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	2.757E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	2.068E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.853E-03
chromosome segregation	GO:0007059		5.323E-06	2.04E-03
DNA topological change	GO:0006265		5.392E-06	1.772E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	2.169E-03
phosphoinositide-mediated signaling	GO:0048015		1.035E-05	2.644E-03
DNA ligation	GO:0006266		1.293E-05	2.973E-03
positive regulation of viral reproduction	GO:0048524		1.615E-05	3.377E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.033E-07	2.376E-04
positive regulation of cell cycle	GO:0045787		2.592E-06	2.981E-03
positive regulation of viral genome replication	GO:0045070		3.596E-06	2.757E-03
regulation of retroviral genome replication	GO:0045091		3.596E-06	2.068E-03
nucleotide-excision repair	GO:0006289		4.027E-06	1.853E-03
chromosome segregation	GO:0007059		5.323E-06	2.04E-03
DNA topological change	GO:0006265		5.392E-06	1.772E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.546E-06	2.169E-03
phosphoinositide-mediated signaling	GO:0048015		1.035E-05	2.644E-03
DNA ligation	GO:0006266		1.293E-05	2.973E-03
positive regulation of viral reproduction	GO:0048524		1.615E-05	3.377E-03