Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5908-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1744	1.515e-02	5.695e-03	8.086e-02
IPC-NIBC-129	0.1769	6.696e-02	5.581e-02	3.111e-01
Ivshina_GPL96-GPL97	0.2270	5.043e-02	4.041e-02	4.390e-01
Loi_GPL570	0.2499	8.764e-02	1.110e-01	3.450e-01
Loi_GPL96-GPL97	0.1832	8.644e-03	4.041e-03	1.123e-01
Pawitan_GPL96-GPL97	0.3230	7.816e-02	3.968e-02	4.231e-01
Schmidt	0.2205	2.644e-02	2.806e-02	1.700e-01
Sotiriou	0.2667	8.342e-02	3.231e-02	5.103e-01
Wang	0.1949	5.220e-02	3.704e-02	1.862e-01
Zhang	0.2775	7.299e-03	3.581e-03	3.610e-02

Expression data for subnetwork 5908-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5908-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
rap1b		1	90	120	126	0.017	0.099	0.110	0.149	0.058	0.006	-0.127	0.028	0.144	0.103
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hras		5	20	51	36	0.049	-0.030	0.094	0.210	0.160	0.245	0.086	0.208	0.001	0.003
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
hus1		6	17	22	17	-0.058	0.197	0.116	0.109	0.101	0.160	0.072	0.082	0.081	0.071
prkci		1	90	120	126	0.065	0.104	0.012	0.170	0.112	-0.170	0.196	0.128	-0.054	0.124
map2k1		3	39	51	42	0.154	0.096	0.093	0.013	0.095	0.207	0.082	0.096	-0.043	undef
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5908-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
response to light stimulus	GO:0009416		1.924E-06	4.425E-03
positive regulation of viral genome replication	GO:0045070		8.885E-06	0.01021795
regulation of retroviral genome replication	GO:0045091		8.885E-06	6.812E-03
response to UV	GO:0009411		1.13E-05	6.496E-03
regulation of DNA replication	GO:0006275		1.286E-05	5.915E-03
photoreceptor cell development	GO:0042461		1.332E-05	5.106E-03
DNA topological change	GO:0006265		1.332E-05	4.377E-03
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	3.83E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	4.763E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		1.864E-05	4.287E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	5.193E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		2.42E-06	5.912E-03
response to UV	GO:0009411		2.814E-06	3.437E-03
regulation of DNA replication	GO:0006275		2.972E-06	2.42E-03
photoreceptor cell development	GO:0042461		3.629E-06	2.216E-03
regulation of retroviral genome replication	GO:0045091		3.629E-06	1.773E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	2.756E-03
DNA topological change	GO:0006265		6.77E-06	2.363E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		6.77E-06	2.067E-03
regulation of Rac protein signal transduction	GO:0035020		6.77E-06	1.838E-03
regulation of synaptic transmission. GABAergic	GO:0032228		6.77E-06	1.654E-03
phosphoinositide-mediated signaling	GO:0048015		7.197E-06	1.598E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		3.37E-06	8.109E-03
regulation of retroviral genome replication	GO:0045091		3.37E-06	4.054E-03
response to UV	GO:0009411		4.121E-06	3.305E-03
regulation of DNA replication	GO:0006275		4.871E-06	2.93E-03
photoreceptor cell development	GO:0042461		5.053E-06	2.432E-03
DNA topological change	GO:0006265		9.426E-06	3.78E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		9.426E-06	3.24E-03
regulation of Rac protein signal transduction	GO:0035020		9.426E-06	2.835E-03
regulation of synaptic transmission. GABAergic	GO:0032228		9.426E-06	2.52E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	2.268E-03
phosphoinositide-mediated signaling	GO:0048015		1.178E-05	2.577E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		2.42E-06	5.912E-03
response to UV	GO:0009411		2.814E-06	3.437E-03
regulation of DNA replication	GO:0006275		2.972E-06	2.42E-03
photoreceptor cell development	GO:0042461		3.629E-06	2.216E-03
regulation of retroviral genome replication	GO:0045091		3.629E-06	1.773E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	2.756E-03
DNA topological change	GO:0006265		6.77E-06	2.363E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		6.77E-06	2.067E-03
regulation of Rac protein signal transduction	GO:0035020		6.77E-06	1.838E-03
regulation of synaptic transmission. GABAergic	GO:0032228		6.77E-06	1.654E-03
phosphoinositide-mediated signaling	GO:0048015		7.197E-06	1.598E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		3.37E-06	8.109E-03
regulation of retroviral genome replication	GO:0045091		3.37E-06	4.054E-03
response to UV	GO:0009411		4.121E-06	3.305E-03
regulation of DNA replication	GO:0006275		4.871E-06	2.93E-03
photoreceptor cell development	GO:0042461		5.053E-06	2.432E-03
DNA topological change	GO:0006265		9.426E-06	3.78E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		9.426E-06	3.24E-03
regulation of Rac protein signal transduction	GO:0035020		9.426E-06	2.835E-03
regulation of synaptic transmission. GABAergic	GO:0032228		9.426E-06	2.52E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	2.268E-03
phosphoinositide-mediated signaling	GO:0048015		1.178E-05	2.577E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of viral genome replication	GO:0045070		3.37E-06	8.109E-03
regulation of retroviral genome replication	GO:0045091		3.37E-06	4.054E-03
response to UV	GO:0009411		4.121E-06	3.305E-03
regulation of DNA replication	GO:0006275		4.871E-06	2.93E-03
photoreceptor cell development	GO:0042461		5.053E-06	2.432E-03
DNA topological change	GO:0006265		9.426E-06	3.78E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		9.426E-06	3.24E-03
regulation of Rac protein signal transduction	GO:0035020		9.426E-06	2.835E-03
regulation of synaptic transmission. GABAergic	GO:0032228		9.426E-06	2.52E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.426E-06	2.268E-03
phosphoinositide-mediated signaling	GO:0048015		1.178E-05	2.577E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
response to light stimulus	GO:0009416		1.924E-06	4.425E-03
positive regulation of viral genome replication	GO:0045070		8.885E-06	0.01021795
regulation of retroviral genome replication	GO:0045091		8.885E-06	6.812E-03
response to UV	GO:0009411		1.13E-05	6.496E-03
regulation of DNA replication	GO:0006275		1.286E-05	5.915E-03
photoreceptor cell development	GO:0042461		1.332E-05	5.106E-03
DNA topological change	GO:0006265		1.332E-05	4.377E-03
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	3.83E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	4.763E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		1.864E-05	4.287E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	5.193E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
response to light stimulus	GO:0009416		1.924E-06	4.425E-03
positive regulation of viral genome replication	GO:0045070		8.885E-06	0.01021795
regulation of retroviral genome replication	GO:0045091		8.885E-06	6.812E-03
response to UV	GO:0009411		1.13E-05	6.496E-03
regulation of DNA replication	GO:0006275		1.286E-05	5.915E-03
photoreceptor cell development	GO:0042461		1.332E-05	5.106E-03
DNA topological change	GO:0006265		1.332E-05	4.377E-03
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	3.83E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	4.763E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		1.864E-05	4.287E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	5.193E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
response to light stimulus	GO:0009416		1.924E-06	4.425E-03
positive regulation of viral genome replication	GO:0045070		8.885E-06	0.01021795
regulation of retroviral genome replication	GO:0045091		8.885E-06	6.812E-03
response to UV	GO:0009411		1.13E-05	6.496E-03
regulation of DNA replication	GO:0006275		1.286E-05	5.915E-03
photoreceptor cell development	GO:0042461		1.332E-05	5.106E-03
DNA topological change	GO:0006265		1.332E-05	4.377E-03
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	3.83E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	4.763E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		1.864E-05	4.287E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	5.193E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
response to light stimulus	GO:0009416		1.924E-06	4.425E-03
positive regulation of viral genome replication	GO:0045070		8.885E-06	0.01021795
regulation of retroviral genome replication	GO:0045091		8.885E-06	6.812E-03
response to UV	GO:0009411		1.13E-05	6.496E-03
regulation of DNA replication	GO:0006275		1.286E-05	5.915E-03
photoreceptor cell development	GO:0042461		1.332E-05	5.106E-03
DNA topological change	GO:0006265		1.332E-05	4.377E-03
regulation of Rac protein signal transduction	GO:0035020		1.332E-05	3.83E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.864E-05	4.763E-03
establishment or maintenance of epithelial cell apical/basal polarity	GO:0045197		1.864E-05	4.287E-03
positive regulation of small GTPase mediated signal transduction	GO:0051057		2.484E-05	5.193E-03